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  • Prioritizing transcriptional factors in gene regulatory networks with PageRank. iScience Ding, H., Yang, Y., Xue, Y., Seninge, L., Gong, H., Safavi, R., Califano, A., Stuart, J. M. 2021; 24 (1): 102017

    Abstract

    Biological states are controlled by orchestrated transcriptional factors (TFs) within gene regulatory networks. Here we show TFs responsible for the dynamic changes of biological states can be prioritized with temporal PageRank. We further show such TF prioritization can be extended by integrating gene regulatory networks reverse engineered from multi-omics profiles, e.g. gene expression, chromatin accessibility, and chromosome conformation assays, using multiplex PageRank.

    View details for DOI 10.1016/j.isci.2020.102017

    View details for PubMedID 33490923