Bio


I am a staff scientist in the Stanford PULSE Institute at SLAC National Accelerator Laboratory, where I work in the Solution Phase Chemistry Group. I am interested in understanding the excited state processes that drive photochemical reactions of transition metal complexes relevant for solar energy conversion and catalysis. My research takes advantage of the atomic specificity of ultrafast x-ray methods at the Linac Coherent Light Source (LCLS), coupled with complementary ultrafast optical spectroscopy methods, to resolve the dynamics and reaction mechanisms of transition metal complexes acting as photosensitizers and photocatalysts.

Research website: https://ultrafast.stanford.edu/spc-solution-phase-chemistry

Education & Certifications


  • PhD, University of California Berkeley, Chemistry (2012)
  • B.A./M.S., Brandeis University, Chemistry (2007)

Professional Affiliations and Activities


  • Principal Investigator, Stanford PULSE Institute (2015 - Present)

All Publications


  • Following Metal-to-Ligand Charge-Transfer Dynamics with Ligand and Spin Specificity Using Femtosecond Resonant Inelastic X-ray Scattering at the Nitrogen K-Edge. The journal of physical chemistry letters Jay, R. M., Eckert, S., Van Kuiken, B. E., Ochmann, M., Hantschmann, M., Cordones, A. A., Cho, H., Hong, K., Ma, R., Lee, J. H., Dakovski, G. L., Turner, J. J., Minitti, M. P., Quevedo, W., Pietzsch, A., Beye, M., Kim, T. K., Schoenlein, R. W., Wernet, P., Fohlisch, A., Huse, N. 2021: 6676-6683

    Abstract

    We demonstrate for the case of photoexcited [Ru(2,2'-bipyridine)3]2+ how femtosecond resonant inelastic X-ray scattering (RIXS) at the ligand K-edge allows one to uniquely probe changes in the valence electronic structure following a metal-to-ligand charge-transfer (MLCT) excitation. Metal-ligand hybridization is probed by nitrogen-1s resonances providing information on both the electron-accepting ligand in the MLCT state and the hole density of the metal center. By comparing to spectrum calculations based on density functional theory, we are able to distinguish the electronic structure of the electron-accepting ligand and the other ligands and determine a temporal upper limit of (250 ± 40) fs for electron localization following the charge-transfer excitation. The spin of the localized electron is deduced from the selection rules of the RIXS process establishing new experimental capabilities for probing transient charge and spin densities.

    View details for DOI 10.1021/acs.jpclett.1c01401

    View details for PubMedID 34260255

  • Direct observation of coherent femtosecond solvent reorganization coupled to intramolecular electron transfer. Nature chemistry Biasin, E., Fox, Z. W., Andersen, A., Ledbetter, K., Kjar, K. S., Alonso-Mori, R., Carlstad, J. M., Chollet, M., Gaynor, J. D., Glownia, J. M., Hong, K., Kroll, T., Lee, J. H., Liekhus-Schmaltz, C., Reinhard, M., Sokaras, D., Zhang, Y., Doumy, G., March, A. M., Southworth, S. H., Mukamel, S., Gaffney, K. J., Schoenlein, R. W., Govind, N., Cordones, A. A., Khalil, M. 2021

    Abstract

    It is well known that the solvent plays a critical role in ultrafast electron-transfer reactions. However, solvent reorganization occurs on multiple length scales, and selectively measuring short-range solute-solvent interactions at the atomic level with femtosecond time resolution remains a challenge. Here we report femtosecond X-ray scattering and emission measurements following photoinduced charge-transfer excitation in a mixed-valence bimetallic (FeiiRuiii) complex in water, and their interpretation using non-equilibrium molecular dynamics simulations. Combined experimental and computational analysis reveals that the charge-transfer excited state has a lifetime of 62fs and that coherent translational motions of the first solvation shell are coupled to the back electron transfer. Our molecular dynamics simulations identify that the observed coherent translational motions arise from hydrogen bonding changes between the solute and nearby water molecules upon photoexcitation, and have an amplitude of tenths of angstroms, 120-200cm-1 frequency and ~100fs relaxation time. This study provides an atomistic view of coherent solvent reorganization mediating ultrafast intramolecular electron transfer.

    View details for DOI 10.1038/s41557-020-00629-3

    View details for PubMedID 33589787

  • Excited-State Charge Distribution of a Donor-π-Acceptor Zn Porphyrin Probed by N K-Edge Transient Absorption Spectroscopy. The journal of physical chemistry letters Cordones, A. A., Pemmaraju, C. D., Lee, J. H., Zegkinoglou, I. n., Ragoussi, M. E., Himpsel, F. J., de la Torre, G. n., Schoenlein, R. W. 2021: 1182–88

    Abstract

    Zinc porphyrin solar cell dyes with donor-π-acceptor architectures combine light absorber (π), electron-donor, and electron-acceptor moieties inside a single molecule with atomic precision. The donor-π-acceptor design promotes the separation of charge carriers following optical excitation. Here, we probe the excited-state electronic structure within such molecules by combining time-resolved X-ray absorption spectroscopy at the N K-edge with first-principles time-dependent density functional theory (TD-DFT) calculations. Customized Zn porphyrins with strong-donor triphenylamine groups or weak-donor tri-tert-butylbenzene groups were synthesized. Energetically well-separated N K-edge absorption features simultaneously probe the excited-state electronic structure from the perspectives of the macrocycle and triphenylamine N atoms. New absorption transitions between the macrocycle N atoms and the excited-state HOMO vacancy are observed, and the triphenylamine associated absorption feature blue-shifts, consistent with partial oxidation of the donor groups in the excited state.

    View details for DOI 10.1021/acs.jpclett.0c03725

    View details for PubMedID 33480697

  • Structure retrieval in liquid-phase electron scattering. Physical chemistry chemical physics : PCCP Yang, J., Nunes, J. P., Ledbetter, K., Biasin, E., Centurion, M., Chen, Z., Cordones, A. A., Crissman, C., Deponte, D. P., Glenzer, S. H., Lin, M., Mo, M., Rankine, C. D., Shen, X., Wolf, T. J., Wang, X. 2020

    Abstract

    Electron scattering on liquid samples has been enabled recently by the development of ultrathin liquid sheet technologies. The data treatment of liquid-phase electron scattering has been mostly reliant on methodologies developed for gas electron diffraction, in which theoretical inputs and empirical fittings are often needed to account for the atomic form factor and remove the inelastic scattering background. In this work, we present an alternative data treatment method that is able to retrieve the radial distribution of all the charged particle pairs without the need of either theoretical inputs or empirical fittings. The merits of this new method are illustrated through the retrieval of real-space molecular structure from experimental electron scattering patterns of liquid water, carbon tetrachloride, chloroform, and dichloromethane.

    View details for DOI 10.1039/d0cp06045c

    View details for PubMedID 33367391

  • Photophysics of graphene quantum dot assemblies with axially coordinated cobaloxime catalysts. The Journal of chemical physics Singh, V., Gupta, N., Hargenrader, G. N., Askins, E. J., Valentine, A. J., Kumar, G., Mara, M. W., Agarwal, N., Li, X., Chen, L. X., Cordones, A. A., Glusac, K. D. 2020; 153 (12): 124903

    Abstract

    We report a study of chromophore-catalyst assemblies composed of light harvesting hexabenzocoronene (HBC) chromophores axially coordinated to two cobaloxime complexes. The chromophore-catalyst assemblies were prepared using bottom-up synthetic methodology and characterized using solid-state NMR, IR, and x-ray absorption spectroscopy. Detailed steady-state and time-resolved laser spectroscopy was utilized to identify the photophysical properties of the assemblies, coupled with time-dependent DFT calculations to characterize the relevant excited states. The HBC chromophores tend to assemble into aggregates that exhibit high exciton diffusion length (D = 18.5 molecule2/ps), indicating that over 50 chromophores can be sampled within their excited state lifetime. We find that the axial coordination of cobaloximes leads to a significant reduction in the excited state lifetime of the HBC moiety, and this finding was discussed in terms of possible electron and energy transfer pathways. By comparing the experimental quenching rate constant (1.0 * 109 s-1) with the rate constant estimates for Marcus electron transfer (5.7 * 108 s-1) and Forster/Dexter energy transfers (8.1 * 106 s-1 and 1.0 * 1010 s-1), we conclude that both Dexter energy and Marcus electron transfer process are possible deactivation pathways in CoQD-A. No charge transfer or energy transfer intermediate was detected in transient absorption spectroscopy, indicating fast, subpicosecond return to the ground state. These results provide important insights into the factors that control the photophysical properties of photocatalytic chromophore-catalyst assemblies.

    View details for DOI 10.1063/5.0018581

    View details for PubMedID 33003752

  • Chemical control of competing electron transfer pathways in iron tetracyano-polypyridyl photosensitizers CHEMICAL SCIENCE Kunnus, K., Li, L., Titus, C., Lee, S., Reinhard, M. E., Koroidov, S., Kjaer, K. S., Hong, K., Ledbetter, K., Doriese, W. B., O'Neil, G. C., Swetz, D. S., Ullom, J., Li, D., Irwin, K., Nordlund, D., Cordones, A., Gaffney, K. J. 2020; 11 (17): 4360–73

    View details for DOI 10.1039/c9sc06272f

    View details for Web of Science ID 000532365500005

  • Liquid-phase mega-electron-volt ultrafast electron diffraction STRUCTURAL DYNAMICS-US Nunes, J. F., Ledbetter, K., Lin, M., Kozina, M., DePonte, D. P., Biasin, E., Centurion, M., Crissman, C. J., Dunning, M., Guillet, S., Jobe, K., Liu, Y., Mo, M., Shen, X., Sublett, R., Weathersby, S., Yoneda, C., Wolf, T. A., Yang, J., Cordones, A. A., Wang, X. J. 2020; 7 (2): 024301

    Abstract

    The conversion of light into usable chemical and mechanical energy is pivotal to several biological and chemical processes, many of which occur in solution. To understand the structure-function relationships mediating these processes, a technique with high spatial and temporal resolutions is required. Here, we report on the design and commissioning of a liquid-phase mega-electron-volt (MeV) ultrafast electron diffraction instrument for the study of structural dynamics in solution. Limitations posed by the shallow penetration depth of electrons and the resulting information loss due to multiple scattering and the technical challenge of delivering liquids to vacuum were overcome through the use of MeV electrons and a gas-accelerated thin liquid sheet jet. To demonstrate the capabilities of this instrument, the structure of water and its network were resolved up to the 3 rd hydration shell with a spatial resolution of 0.6 Å; preliminary time-resolved experiments demonstrated a temporal resolution of 200 fs.

    View details for DOI 10.1063/1.5144518

    View details for Web of Science ID 000531214100001

    View details for PubMedID 32161776

    View details for PubMedCentralID PMC7062553

  • Excited state charge distribution and bond expansion of ferrous complexes observed with femtosecond valence-to-core x-ray emission spectroscopy. The Journal of chemical physics Ledbetter, K. n., Reinhard, M. E., Kunnus, K. n., Gallo, A. n., Britz, A. n., Biasin, E. n., Glownia, J. M., Nelson, S. n., Van Driel, T. B., Weninger, C. n., Zederkof, D. B., Haldrup, K. n., Cordones, A. A., Gaffney, K. J., Sokaras, D. n., Alonso-Mori, R. n. 2020; 152 (7): 074203

    Abstract

    Valence-to-core x-ray emission spectroscopy (VtC XES) combines the sample flexibility and element specificity of hard x-rays with the chemical environment sensitivity of valence spectroscopy. We extend this technique to study geometric and electronic structural changes induced by photoexcitation in the femtosecond time domain via laser-pump, x-ray probe experiments using an x-ray free electron laser. The results of time-resolved VtC XES on a series of ferrous complexes [Fe(CN)2n(2, 2'-bipyridine)3-n]-2n+2, n = 1, 2, 3, are presented. Comparisons of spectra obtained from ground state density functional theory calculations reveal signatures of excited state bond length and oxidation state changes. An oxidation state change associated with a metal-to-ligand charge transfer state with a lifetime of less than 100 fs is observed, as well as bond length changes associated with metal-centered excited states with lifetimes of 13 ps and 250 ps.

    View details for DOI 10.1063/1.5139441

    View details for PubMedID 32087640

  • Chemical control of competing electron transfer pathways in iron tetracyano-polypyridyl photosensitizers. Chemical science Kunnus, K., Li, L., Titus, C. J., Lee, S. J., Reinhard, M. E., Koroidov, S., Kjær, K. S., Hong, K., Ledbetter, K., Doriese, W. B., O'Neil, G. C., Swetz, D. S., Ullom, J. N., Li, D., Irwin, K., Nordlund, D., Cordones, A. A., Gaffney, K. J. 2020; 11 (17): 4360-4373

    Abstract

    Photoinduced intramolecular electron transfer dynamics following metal-to-ligand charge-transfer (MLCT) excitation of [Fe(CN)4(2,2'-bipyridine)]2- (1), [Fe(CN)4(2,3-bis(2-pyridyl)pyrazine)]2- (2) and [Fe(CN)4(2,2'-bipyrimidine)]2- (3) were investigated in various solvents with static and time-resolved UV-Visible absorption spectroscopy and Fe 2p3d resonant inelastic X-ray scattering (RIXS). This series of polypyridyl ligands, combined with the strong solvatochromism of the complexes, enables the 1MLCT vertical energy to be varied from 1.64 eV to 2.64 eV and the 3MLCT lifetime to range from 180 fs to 67 ps. The 3MLCT lifetimes in 1 and 2 decrease exponentially as the MLCT energy increases, consistent with electron transfer to the lowest energy triplet metal-centred (3MC) excited state, as established by the Tanabe-Sugano analysis of the Fe 2p3d RIXS data. In contrast, the 3MLCT lifetime in 3 changes non-monotonically with MLCT energy, exhibiting a maximum. This qualitatively distinct behaviour results from a competing 3MLCT → ground state (GS) electron transfer pathway that exhibits energy gap law behaviour. The 3MLCT → GS pathway involves nuclear tunnelling for the high-frequency polypyridyl breathing mode (hν = 1530 cm-1), which is most displaced for complex 3, making this pathway significantly more efficient. Our study demonstrates that the excited state relaxation mechanism of Fe polypyridyl photosensitizers can be readily tuned by ligand and solvent environment. Furthermore, our study reveals that extending charge transfer lifetimes requires control of the relative energies of the 3MLCT and the 3MC states and suppression of the intramolecular distortion of the acceptor ligand in the 3MLCT excited state.

    View details for DOI 10.1039/c9sc06272f

    View details for PubMedID 34122894

    View details for PubMedCentralID PMC8159445

  • Author Correction: Generation and characterization of ultrathin free-flowing liquid sheets. Nature communications Koralek, J. D., Kim, J. B., Bruza, P., Curry, C. B., Chen, Z., Bechtel, H. A., Cordones, A. A., Sperling, P., Toleikis, S., Kern, J. F., Moeller, S. P., Glenzer, S. H., DePonte, D. P. 2019; 10 (1): 1615

    Abstract

    The original version of this Article contained an error in Eq. (1). This has been corrected in both the PDF and HTML versions of the Article.

    View details for DOI 10.1038/s41467-019-09457-7

    View details for PubMedID 30944301

  • Hot Branching Dynamics in a Light-Harvesting Iron Carbene Complex Revealed by Ultrafast X-ray Emission Spectroscopy. Angewandte Chemie (International ed. in English) Tatsuno, H. n., Kjaer, K. S., Kunnus, K. n., Harlang, T. C., Timm, C. n., Guo, M. n., Chàbera, P. n., Fredin, L. A., Hartsock, R. W., Reinhard, M. E., Koroidov, S. n., Li, L. n., Cordones, A. A., Gordivska, O. n., Prakash, O. n., Liu, Y. n., Laursen, M. G., Biasin, E. n., Hansen, F. B., Vester, P. n., Christensen, M. n., Haldrup, K. n., Németh, Z. n., Sárosiné Szemes, D. n., Bajnóczi, É. n., Vankó, G. n., Van Driel, T. B., Alonso-Mori, R. n., Glownia, J. M., Nelson, S. n., Sikorski, M. n., Lemke, H. T., Sokaras, D. n., Canton, S. E., Dohn, A. O., Møller, K. B., Nielsen, M. M., Gaffney, K. J., Wärnmark, K. n., Sundström, V. n., Persson, P. n., Uhlig, J. n. 2019

    Abstract

    Iron N-heterocyclic carbene (NHC) complexes have received a great deal of attention recently because of their growing potential as light sensitizers or photocatalysts. We present a sub-ps X-ray spectroscopy study of an FeII NHC complex that identifies and quantifies the states involved in the deactivation cascade after light absorption. Excited molecules relax back to the ground state along two pathways: After population of a hot 3 MLCT state, from the initially excited 1 MLCT state, 30 % of the molecules undergo ultrafast (150 fs) relaxation to the 3 MC state, in competition with vibrational relaxation and cooling to the relaxed 3 MLCT state. The relaxed 3 MLCT state then decays much more slowly (7.6 ps) to the 3 MC state. The 3 MC state is rapidly (2.2 ps) deactivated to the ground state. The 5 MC state is not involved in the deactivation pathway. The ultrafast partial deactivation of the 3 MLCT state constitutes a loss channel from the point of view of photochemical efficiency and highlights the necessity to screen transition-metal complexes for similar ultrafast decays to optimize photochemical performance.

    View details for DOI 10.1002/anie.201908065

    View details for PubMedID 31602726

  • Probing the Electron Accepting Orbitals of Ni-Centered Hydrogen Evolution Catalysts with Noninnocent Ligands by Ni L-Edge and S K-Edge X-ray Absorption INORGANIC CHEMISTRY Koroidov, S., Hong, K., Kjaer, K. S., Li, L., Kunnus, K., Reinhard, M., Hartsock, R. W., Amit, D., Eisenberg, R., Das Pemmaraju, C., Gaffney, K. J., Cordones, A. A. 2018; 57 (21): 13167–75
  • Author Correction: Generation and characterization of ultrathin free-flowing liquid sheets. Nature communications Koralek, J. D., Kim, J. B., Bruza, P., Curry, C. B., Chen, Z., Bechtel, H. A., Cordones, A. A., Sperling, P., Toleikis, S., Kern, J. F., Moeller, S. P., Glenzer, S. H., DePonte, D. P. 2018; 9 (1): 2860

    Abstract

    The original version of this article omitted the following from the Acknowledgements:'P.B. was funded by the ELI Extreme Light Infrastructure Phase 2 (CZ.02.1.01/0.0/0.0/15008/0000162) from the European Regional Development Fund and the EUCALL project funded from the EU Horizon 2020 research and innovation programme under grant agreement No 654220,' which replaces the previous 'P.B. was funded by the ELI Extreme Light Infrastructure Phase 2 (CZ.02.1.01/0.0/0.0/15008/0000162) from the European Regional Development Fund.'This has been corrected in both the PDF and HTML versions of the article.

    View details for DOI 10.1038/s41467-018-05365-4

    View details for PubMedID 30018291

  • UV-Photochemistry of the Disulfide Bond: Evolution of Early Photoproducts from Picosecond X-ray Absorption Spectroscopy at the Sulfur K-Edge JOURNAL OF THE AMERICAN CHEMICAL SOCIETY Ochmann, M., Hussain, A., von Ahnen, I., Cordones, A. A., Hong, K., Lee, J., Ma, R., Adamczyk, K., Kim, T., Schoenlein, R. W., Vendrell, O., Huse, N. 2018; 140 (21): 6554–61

    Abstract

    We have investigated dimethyl disulfide as the basic moiety for understanding the photochemistry of disulfide bonds, which are central to a broad range of biochemical processes. Picosecond time-resolved X-ray absorption spectroscopy at the sulfur K-edge provides unique element-specific insight into the photochemistry of the disulfide bond initiated by 267 nm femtosecond pulses. We observe a broad but distinct transient induced absorption spectrum which recovers on at least two time scales in the nanosecond range. We employed RASSCF electronic structure calculations to simulate the sulfur-1s transitions of multiple possible chemical species, and identified the methylthiyl and methylperthiyl radicals as the primary reaction products. In addition, we identify disulfur and the CH2S thione as the secondary reaction products of the perthiyl radical that are most likely to explain the observed spectral and kinetic signatures of our experiment. Our study underscores the importance of elemental specificity and the potential of time-resolved X-ray spectroscopy to identify short-lived reaction products in complex reaction schemes that underlie the rich photochemistry of disulfide systems.

    View details for DOI 10.1021/jacs.7b13455

    View details for Web of Science ID 000434101100010

    View details for PubMedID 29771112

  • Transient metal-centered states mediate isomerization of a photochromic rutheniumsulfoxide complex NATURE COMMUNICATIONS Cordones, A. A., Lee, J., Hong, K., Cho, H., Garg, K., Boggio-Pasqua, M., Rack, J. J., Huse, N., Schoenlein, R. W., Kim, T. 2018; 9: 1989

    Abstract

    Ultrafast isomerization reactions underpin many processes in (bio)chemical systems and molecular materials. Understanding the coupled evolution of atomic and molecular structure during isomerization is paramount for control and rational design in molecular science. Here we report transient X-ray absorption studies of the photo-induced linkage isomerization of a Ru-based photochromic molecule. X-ray spectra reveal the spin and valence charge of the Ru atom and provide experimental evidence that metal-centered excited states mediate isomerization. Complementary X-ray spectra of the functional ligand S atoms probe the nuclear structural rearrangements, highlighting the formation of two metal-centered states with different metal-ligand bonding. These results address an essential open question regarding the relative roles of transient charge-transfer and metal-centered states in mediating photoisomerization. Global temporal and spectral data analysis combined with time-dependent density functional theory reveals a complex mechanism for photoisomerization with atomic details of the transient molecular and electronic structure not accessible by other means.

    View details for PubMedID 29777157

  • Comprehensive Experimental and Computational Spectroscopic Study of Hexacyanoferrate Complexes in Water: From Infrared to X-ray Wavelengths JOURNAL OF PHYSICAL CHEMISTRY B Ross, M., Andersen, A., Fox, Z. W., Zhang, Y., Hong, K., Lee, J., Cordones, A., March, A., Doumy, G., Southworth, S. H., Marcus, M. A., Schoenlein, R. W., Mukamel, S., Govind, N., Khalil, M. 2018; 122 (19): 5075–86

    Abstract

    We present a joint experimental and computational study of the hexacyanoferrate aqueous complexes at equilibrium in the 250 meV to 7.15 keV regime. The experiments and the computations include the vibrational spectroscopy of the cyanide ligands, the valence electronic absorption spectra, and Fe 1s core hole spectra using element-specific-resonant X-ray absorption and emission techniques. Density functional theory-based quantum mechanics/molecular mechanics molecular dynamics simulations are performed to generate explicit solute-solvent configurations, which serve as inputs for the spectroscopy calculations of the experiments spanning the IR to X-ray wavelengths. The spectroscopy simulations are performed at the same level of theory across this large energy window, which allows for a systematic comparison of the effects of explicit solute-solvent interactions in the vibrational, valence electronic, and core-level spectra of hexacyanoferrate complexes in water. Although the spectroscopy of hexacyanoferrate complexes in solution has been the subject of several studies, most of the previous works have focused on a narrow energy window and have not accounted for explicit solute-solvent interactions in their spectroscopy simulations. In this work, we focus our analysis on identifying how the local solvation environment around the hexacyanoferrate complexes influences the intensity and line shape of specific spectroscopic features in the UV/vis, X-ray absorption, and valence-to-core X-ray emission spectra. The identification of these features and their relationship to solute-solvent interactions is important because hexacyanoferrate complexes serve as model systems for understanding the photochemistry and photophysics of a large class of Fe(II) and Fe(III) complexes in solution.

    View details for DOI 10.1021/acs.jpcb.7b12532

    View details for Web of Science ID 000432754100013

    View details for PubMedID 29613798

  • Generation and characterization of ultrathin free-flowing liquid sheets NATURE COMMUNICATIONS Koralek, J. D., Kim, J. B., Bruza, P., Curry, C. B., Chen, Z., Bechtel, H. A., Cordones, A. A., Sperling, P., Toleikis, S., Kern, J. F., Moeller, S. P., Glenzer, S. H., DePonte, D. P. 2018; 9: 1353

    Abstract

    The physics and chemistry of liquid solutions play a central role in science, and our understanding of life on Earth. Unfortunately, key tools for interrogating aqueous systems, such as infrared and soft X-ray spectroscopy, cannot readily be applied because of strong absorption in water. Here we use gas-dynamic forces to generate free-flowing, sub-micron, liquid sheets which are two orders of magnitude thinner than anything previously reported. Optical, infrared, and X-ray spectroscopies are used to characterize the sheets, which are found to be tunable in thickness from over 1 μm  down to less than 20 nm, which corresponds to fewer than 100 water molecules thick. At this thickness, aqueous sheets can readily transmit photons across the spectrum, leading to potentially transformative applications in infrared, X-ray, electron spectroscopies and beyond. The ultrathin sheets are stable for days in vacuum, and we demonstrate their use at free-electron laser and synchrotron light sources.

    View details for DOI 10.1038/s41467-018-03696-w

    View details for Web of Science ID 000429521200005

    View details for PubMedID 29636445

    View details for PubMedCentralID PMC5893585

  • Solvent control of charge transfer excited state relaxation pathways in [Fe(2,2 '-bipyridine)(CN)(4)](2-) PHYSICAL CHEMISTRY CHEMICAL PHYSICS Kjaer, K. S., Kunnus, K., Harlang, T. B., Van Driel, T. B., Ledbetter, K., Hartsock, R. W., Reinhard, M. E., Koroidov, S., Li, L., Laursen, M. G., Biasin, E., Hansen, F. B., Vester, P., Christensen, M., Haldrup, K., Nielsen, M. M., Chabera, P., Liu, Y., Tatsuno, H., Timm, C., Uhlig, J., Sundstom, V., Nemeth, Z., Szemes, D., Bajnoczi, E., Vanko, G., Alonso-Mori, R., Glownia, J. M., Nelson, S., Sikorski, M., Sokaras, D., Lemke, H. T., Canton, S. E., Warnmark, K., Persson, P., Cordones, A. A., Gaffney, K. J. 2018; 20 (6): 4238–49

    Abstract

    The excited state dynamics of solvated [Fe(bpy)(CN)4]2-, where bpy = 2,2'-bipyridine, show significant sensitivity to the solvent Lewis acidity. Using a combination of optical absorption and X-ray emission transient spectroscopies, we have previously shown that the metal to ligand charge transfer (MLCT) excited state of [Fe(bpy)(CN)4]2- has a 19 picosecond lifetime and no discernable contribution from metal centered (MC) states in weak Lewis acid solvents, such as dimethyl sulfoxide and acetonitrile.1,2 In the present work, we use the same combination of spectroscopic techniques to measure the MLCT excited state relaxation dynamics of [Fe(bpy)(CN)4]2- in water, a strong Lewis acid solvent. The charge-transfer excited state is now found to decay in less than 100 femtoseconds, forming a quasi-stable metal centered excited state with a 13 picosecond lifetime. We find that this MC excited state has triplet (3MC) character, unlike other reported six-coordinate Fe(ii)-centered coordination compounds, which form MC quintet (5MC) states. The solvent dependent changes in excited state non-radiative relaxation for [Fe(bpy)(CN)4]2- allows us to infer the influence of the solvent on the electronic structure of the complex. Furthermore, the robust characterization of the dynamics and optical spectral signatures of the isolated 3MC intermediate provides a strong foundation for identifying 3MC intermediates in the electronic excited state relaxation mechanisms of similar Fe-centered systems being developed for solar applications.

    View details for PubMedID 29364300

  • Picosecond sulfur K-edge X-ray absorption spectroscopy with applications to excited state proton transfer STRUCTURAL DYNAMICS Van Kuiken, B. E., Ross, M. R., Strader, M. L., Cordones, A. A., Cho, H., Lee, J., Schoenlein, R. W., Khalil, M. 2017; 4 (4): 044021

    Abstract

    Picosecond X-ray absorption (XA) spectroscopy at the S K-edge (∼2.4 keV) is demonstrated and used to monitor excited state dynamics in a small organosulfur molecule (2-Thiopyridone, 2TP) following optical excitation. Multiple studies have reported that the thione (2TP) is converted into the thiol (2-Mercaptopyridine, 2MP) following photoexcitation. However, the timescale and photochemical pathway of this reaction remain uncertain. In this work, time-resolved XA spectroscopy at the S K-edge is used to monitor the formation and decay of two transient species following 400 nm excitation of 2TP dissolved in acetonitrile. The first transient species forms within the instrument response time (70 ps) and decays within 6 ns. The second transient species forms on a timescale of ∼400 ps and decays on a 15 ns timescale. Time-dependent density functional theory is used to identify the first and second transient species as the lowest-lying triplet states of 2TP and 2MP, respectively. This study demonstrates transient S K-edge XA spectroscopy as a sensitive and viable probe of time-evolving charge dynamics near sulfur sites in small molecules with future applications towards studying complex biological and material systems.

    View details for DOI 10.1063/1.4983157

    View details for Web of Science ID 000402004800022

    View details for PubMedID 28529962

    View details for PubMedCentralID PMC5422206

  • Light-Induced Radical Formation and Isomerization of an Aromatic Thiol in Solution Followed by Time-Resolved X-ray Absorption Spectroscopy at the Sulfur K-Edge JOURNAL OF THE AMERICAN CHEMICAL SOCIETY Ochmann, M., von Ahnen, I., Cordones, A. A., Hussain, A., Lee, J., Hong, K., Adamczyk, K., Vendrell, O., Kim, T., Schoenlein, R. W., Huse, N. 2017; 139 (13): 4797–4804

    Abstract

    We applied time-resolved sulfur-1s absorption spectroscopy to a model aromatic thiol system as a promising method for tracking chemical reactions in solution. Sulfur-1s absorption spectroscopy allows tracking multiple sulfur species with a time resolution of ∼70 ps at synchrotron radiation facilities. Experimental transient spectra combined with high-level electronic structure theory allow identification of a radical and two thione isomers, which are generated upon illumination with 267 nm radiation. Moreover, the regioselectivity of the thione isomerization is explained by the resulting radical frontier orbitals. This work demonstrates the usefulness and potential of time-resolved sulfur-1s absorption spectroscopy for tracking multiple chemical reaction pathways and transient products of sulfur-containing molecules in solution.

    View details for DOI 10.1021/jacs.6b12992

    View details for Web of Science ID 000398764000032

    View details for PubMedID 28219243

  • Soft X-ray spectroscopy studies of adsorption and reaction of CO in the presence of H-2 over 6 nm MnO nanoparticles supported on mesoporous Co3O4 SURFACE SCIENCE Ralston, W. T., Musselwhite, N., Kennedy, G., An, K., Horowitz, Y., Cordones, A. A., Rude, B., Ahmed, M., Melaet, G., Alayoglu, S. 2016; 648: 14–22
  • Electronic and nuclear contributions to time-resolved optical and X-ray absorption spectra of hematite and insights into photoelectrochemical performance Energy & Environmental Science Hayes, D., Hadt, R. G., Emery, J. D., Cordones, A. A., Martinson, A. F., Shelby, M. L., Fransted, K. A., Dahlberg, P. D., Hong, J., Zhang, X., Kong, Q., Schoenlein, R. W., Chen, L. X. 2016; 9 (12): 3754–69

    View details for DOI 10.1039/c6ee02266a

    View details for Web of Science ID 000392915500016

  • X-rays only when you want them: optimized pump-probe experiments using pseudo-single-bunch operation JOURNAL OF SYNCHROTRON RADIATION Hertlein, M. P., Scholl, A., Cordones, A. A., Lee, J. H., Engelhorn, K., Glover, T. E., Barbrel, B., Sun, C., Steier, C., Portmann, G., Robin, D. S. 2015; 22: 729–35

    Abstract

    Laser pump-X-ray probe experiments require control over the X-ray pulse pattern and timing. Here, the first use of pseudo-single-bunch mode at the Advanced Light Source in picosecond time-resolved X-ray absorption experiments on solutions and solids is reported. In this mode the X-ray repetition rate is fully adjustable from single shot to 500 kHz, allowing it to be matched to typical laser excitation pulse rates. Suppressing undesired X-ray pulses considerably reduces detector noise and improves signal to noise in time-resolved experiments. In addition, dose-induced sample damage is considerably reduced, easing experimental setup and allowing the investigation of less robust samples. Single-shot X-ray exposures of a streak camera detector using a conventional non-gated charge-coupled device (CCD) camera are also demonstrated.

    View details for DOI 10.1107/S1600577515001770

    View details for Web of Science ID 000353920300037

    View details for PubMedID 25931090

    View details for PubMedCentralID PMC4416684

  • Aqueous solution/metal interfaces investigated in operando by photoelectron spectroscopy FARADAY DISCUSSIONS Karslioglu, O., Nemsak, S., Zegkinoglou, I., Shavorskiy, A., Hartl, M., Salmassi, F., Gullikson, E. M., Ng, M. L., Rameshan, C., Rude, B., Bianculli, D., Cordones, A. A., Axnanda, S., Crumlin, E. J., Ross, P. N., Schneider, C. M., Hussain, Z., Liu, Z., Fadley, C. S., Bluhm, H. 2015; 180: 35–53

    Abstract

    We describe a new in operando approach for the investigation of heterogeneous processes at solid/liquid interfaces with elemental and chemical specificity which combines the preparation of thin liquid films using the meniscus method with standing wave ambient pressure X-ray photoelectron spectroscopy [Nemšák et al., Nat. Commun., 5, 5441 (2014)]. This technique provides information about the chemical composition across liquid/solid interfaces with sub-nanometer depth resolution and under realistic conditions of solution composition and concentration, pH, as well as electrical bias. In this article, we discuss the basics of the technique and present the first results of measurements on KOH/Ni interfaces.

    View details for DOI 10.1039/c5fd00003c

    View details for Web of Science ID 000358249600002

    View details for PubMedID 25912462

  • Atomic-Scale Perspective of Ultrafast Charge Transfer at a Dye-Semiconductor Interface JOURNAL OF PHYSICAL CHEMISTRY LETTERS Siefermann, K. R., Pemmaraju, C. D., Neppl, S., Shavorskiy, A., Cordones, A. A., Vura-Weis, J., Slaughter, D. S., Sturm, F. P., Weise, F., Bluhm, H., Strader, M. L., Cho, H., Lin, M., Bacellar, C., Khurmi, C., Guo, J., Coslovich, G., Robinson, J. S., Kaindl, R. A., Schoenlein, R. W., Belkacem, A., Neumark, D. M., Leone, S. R., Nordlund, D., Ogasawara, H., Krupin, O., Turner, J. J., Schlotter, W. F., Holmes, M. R., Messerschmidt, M., Minitti, M. P., Gul, S., Zhang, J. Z., Huse, N., Prendergast, D., Gessner, O. 2014; 5 (15): 2753-2759

    Abstract

    Understanding interfacial charge-transfer processes on the atomic level is crucial to support the rational design of energy-challenge relevant systems such as solar cells, batteries, and photocatalysts. A femtosecond time-resolved core-level photoelectron spectroscopy study is performed that probes the electronic structure of the interface between ruthenium-based N3 dye molecules and ZnO nanocrystals within the first picosecond after photoexcitation and from the unique perspective of the Ru reporter atom at the center of the dye. A transient chemical shift of the Ru 3d inner-shell photolines by (2.3 ± 0.2) eV to higher binding energies is observed 500 fs after photoexcitation of the dye. The experimental results are interpreted with the aid of ab initio calculations using constrained density functional theory. Strong indications for the formation of an interfacial charge-transfer state are presented, providing direct insight into a transient electronic configuration that may limit the efficiency of photoinduced free charge-carrier generation.

    View details for DOI 10.1021/jz501264x

    View details for Web of Science ID 000340222200044

    View details for PubMedID 26277975

  • Linking On-State Memory and Distributed Kinetics in Single Nanocrystal Blinking JOURNAL OF PHYSICAL CHEMISTRY B Cordones, A. A., Knappenberger, K. L., Leone, S. R. 2013; 117 (16): 4241–48

    Abstract

    Memory effects in single nanocrystal fluorescence blinking are investigated as a function of the on-state kinetics for CdSe/ZnS quantum dots and CdSe nanorods. The on-state duration probability distributions for single nanocrystal blinking traces are characterized by an inverse power law, which crosses over to exponential decay for long on-state durations. The correlations of subsequent on-state durations (Rlog,on) are found to decrease for nanocrystals that display earlier crossover times and smaller power law coefficients. Specifically, Rlog,on increases from 0.14 ± 0.02 to a saturation value of 0.44 ± 0.01 for nanocrystals with average crossover times of ~100 ms to more than 5.0 s, respectively. The results represent the first link between memory effects and blinking kinetics and are interpreted in the framework of two competing charge trapping mechanisms. A slow fluctuation-based trapping mechanism leads to power-law-distributed on durations and significant memory effects; however, the additional contribution of an ionization-induced trapping pathway is found to induce crossover to exponential decay and decreased memory. Monte Carlo simulations of nanocrystal blinking based on the two trapping mechanisms reproduce the experimental results, suggesting that the power law component and the memory effects correlate with a fluctuation-based mechanism. This effect is found to be universal, occurring for two nanocrystal morphologies and in blinking data measured using a wide range of continuous and pulsed excitation conditions.

    View details for DOI 10.1021/jp3041549

    View details for Web of Science ID 000318211600010

    View details for PubMedID 22967127

  • Effect of Thermal Annealing in Ammonia on the Properties of InGaN Nanowires with Different Indium Concentrations JOURNAL OF PHYSICAL CHEMISTRY C Hahn, C., Cordones, A. A., Andrews, S. C., Gao, H., Fu, A., Leone, S. R., Yang, P. 2013; 117 (7): 3627-3634

    View details for DOI 10.1021/jp311685x

    View details for Web of Science ID 000315432100050

  • Time-Resolved X-Ray Photoelectron Spectroscopy Techniques For Real-Time Studies Of Interfacial Charge Transfer Dynamics 22nd International Conference on the Application of Accelerators in Research and Industry (CAARI) Shavorskiy, A., Cordones, A., Vura-Weis, J., Siefermann, K., Slaughter, D., Sturm, F., Weise, F., Bluhm, H., Strader, M., Cho, H., Lin, M., Bacellar, C., Khurmi, C., Hertlein, M., Guo, J., Tyliszczak, T., Prendergast, D., Coslovich, G., Robinson, J., Kaindl, R. A., Schoenlein, R. W., Belkacem, A., Weber, T., Neumark, D. M., Leone, S. R., Nordlund, D., Ogasawara, H., Nilsson, A. R., Krupin, O., Turner, J. J., Schlotter, W. F., Holmes, M. R., Heimann, P. A., Messerschmidt, M., Minitti, M. P., Beye, M., Gul, S., Zhang, J. Z., Huse, N., Gessner, O. AMER INST PHYSICS. 2013: 475–479

    View details for DOI 10.1063/1.4802374

    View details for Web of Science ID 000319997900095

  • Mechanisms for charge trapping in single semiconductor nanocrystals probed by fluorescence blinking CHEMICAL SOCIETY REVIEWS Cordones, A. A., Leone, S. R. 2013; 42 (8): 3209–21

    Abstract

    Semiconductor nanocrystal optical and charge transport properties are largely influenced by the trapping of charge carriers on the nanocrystal surface. Charge trapping increases the non-radiative exciton decay pathways, thus decreasing the fluorescence quantum yield, and it also impedes efficient charge transfer at the nanocrystal interface. On a single nanocrystal basis, charge trapping causes interruptions in the otherwise continuous fluorescence known as fluorescence intermittency or blinking. In this tutorial review we examine the relationship between charge trapping and fluorescence blinking. The fluorescence microscopy techniques and statistical analysis methods used to measure single nanocrystal blinking are introduced. The development of numerous blinking mechanisms is reviewed, as is the physical nature of charge trapping sites. An overview of blinking experiments used to probe specific mechanisms for charge carrier trapping is presented. Finally, a summary and outlook are offered. Although the detailed mechanism is not fully understood, blinking experiments are found to provide direct evidence for several charge trapping mechanisms and report on changes to the nature and distribution of charge trapping sites.

    View details for DOI 10.1039/c2cs35452g

    View details for Web of Science ID 000316869700003

    View details for PubMedID 23306775

  • Probing the Interaction of Single Nanocrystals with Inorganic Capping Ligands: Time-Resolved Fluorescence from CdSe-CdS Quantum Dots Capped with Chalcogenidometalates JOURNAL OF THE AMERICAN CHEMICAL SOCIETY Cordones, A. A., Scheele, M., Alivisatos, A., Leone, S. R. 2012; 134 (44): 18366–73

    Abstract

    Fluorescence intermittency and excited-state decay measurements are carried out on single CdSe-CdS core-shell quantum dots (QD) stabilized with chalcogenidometalates (ChaMs, In(2)Se(4)(2-), or Sn(2)S(6)(4-))(-). The results are used to probe the nature and distribution of charge trapping sites in the QD local environment. A comparison is made between capping by a neutral organic ligand (oleylamine) and a small inorganic ligand with high charge density (ChaMs). Overall, shorter on-state durations and longer off-state durations are observed for the ChaMs. These results indicate an increased density of charge trapping sites and increased stabilization of surface-trapped charges. By varying the thickness of the CdS shell, we identified hole trapping by the ligand as the dominant charging mechanism in ChaM-capped QDs. Faster excited-state decay rates are measured for the ChaM-capped QDs, highlighting the role of strongly stabilized trapped charges in this system. Using cyclic voltammetry measurements of the ChaMs, an energy level diagram is constructed relating the ChaMs and CdSe-CdS-QDs that explains their superior performance as active layers in photodetectors.

    View details for DOI 10.1021/ja3071732

    View details for Web of Science ID 000310720900039

    View details for PubMedID 23072613

  • CdSe/ZnS quantum dot intermittency in N,N '-diphenyl-N,N '-bis(3-methylphenyl)-(1,1 '-biphenyl)-4,4 '-diamine (TPD) CHEMICAL PHYSICS LETTERS Bixby, T. J., Cordones, A. A., Leone, S. R. 2012; 521: 7–11
  • Direct Measurement of Off-State Trapping Rate Fluctuations in Single Quantum Dot Fluorescence NANO LETTERS Cordones, A. A., Bixby, T. J., Leone, S. R. 2011; 11 (8): 3366–69

    Abstract

    Fluorescence decay times measured during the off-state of single CdSe/ZnS quantum dot blinking are found to decrease with increasing off-state duration, contradicting the charging model widely considered to explain the blinking phenomenon. The change in the nonradiative process of a short off-state duration compared to a long one is investigated here through simultaneous measurement of fluorescence decay and blinking behavior. The results are investigated in the framework of two models based on fluctuating trapping rates.

    View details for DOI 10.1021/nl2017674

    View details for Web of Science ID 000293665600053

    View details for PubMedID 21732607

  • Evidence for Multiple Trapping Mechanisms in Single CdSe/ZnS Quantum Dots from Fluorescence Intermittency Measurements over a Wide Range of Excitation Intensities JOURNAL OF PHYSICAL CHEMISTRY C Cordones, A. A., Bixby, T. J., Leone, S. R. 2011; 115 (14): 6341–49

    View details for DOI 10.1021/jp2001223

    View details for Web of Science ID 000289215400023