Genetics
Showing 91-100 of 106 Results
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Alun Vaughan Jackson
Postdoctoral Scholar, Genetics
BioCollaborative postdoctoral fellow between the groups of Prof. Michael Bassik (Stanford) and Dr Andreas Puschnik (CZ Biohub) interested in host-virus interactions with the innate immune system.
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Elisa Mariel Visher
Postdoctoral Scholar, Genetics
Current Research and Scholarly InterestsElisa Visher is broadly interested in the (co)evolution of life history strategies, niche breadth, diversification, and adaptability. They use mostly experimental evolution methods in microbial systems to test the predictions and assumptions of theoretical literature. Currently, they am especially interested in understanding the genetics of trade-offs in microbes to better understand patterns of diversity in nature and constraints to adaptation.
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Shannon White
Postdoctoral Scholar, Genetics
BioHi, I'm Shannon White. I began my postdoctoral fellowship in Michael Snyder's lab in the fall of 2020. I received my PhD from Georgetown University in Tumor Biology in Chunling Yi's lab. My graduate worked explore the signaling and metabolic vulnerabilities of NF2-mutant tumors following YAP/TAZ depletion. My postdoctoral work is exploring the epigenetic hallmarks that contribute to colon cancer progression and drug resistance. I am developing colon organoids derived from pre-cancerous polyp tissue collected from Familial Adenomatous Polyposis patients as a model system to investigate epigenetic and signaling responses to chemoprevention treatments.
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Yue Wu
Postdoctoral Scholar, Genetics
Current Research and Scholarly InterestsI built computational methods to integrate and model biological time series, including metabolic dynamics, longitudinal multi-omics data, and micro-sampling. I reduce dimensions, built clusters, and search for causal links.
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Lei Xiong
Postdoctoral Scholar, Genetics
Current Research and Scholarly InterestsMy research focuses on develop deep learning methods to
1. Infer macrophage-tumor cells interaction using spatial multi-omics
2. Decipher the cis-regulatory code using a large language models
3. Predict enhancer-promoter interaction
4. Multi-omics integration
5. Build foundational model for single-cell genomics -
Weize Xu
Postdoctoral Scholar, Genetics
BioDr. Weize Xu is a postdoctoral researcher in Dr. Xiaojie Qiu's laboratory, where he focuses on advancing computational biology and genomics research. He earned his Ph.D. in Dr. Gang Cao's lab, where he made significant contributions to the development of computational methods and pipelines for spatial transcriptomics (MiP-Seq) and single-cell Hi-C (sciDLO Hi-C). His work during this time centered on enhancing data analysis frameworks, providing more precise insights into complex biological systems.
Dr. Xu is also an expert in the development of bioimaging processing softwares. During his Ph.D., he developed the U-FISH method, a deep learning-based approach for detecting signal points in FISH images. This innovative project involved curating a high-quality dataset from diverse sources, ensuring robust performance across various FISH data types. The resulting model demonstrated outstanding generalizability and included a user-friendly Web and LLM interface, making it accessible to researchers worldwide.
In addition to his Ph.D. research, Dr. Xu further honed his skills at SciLifeLab, where he worked under the mentorship of Dr. Wei Ouyang. There, he focused on web programming and developing key components for the Bioimage.IO deep learning platform, gaining valuable experience in creating innovative tools for computational biology.
With a solid foundation in computational biology, deep learning, and bioinformatics, Dr. Xu is passionate about driving cutting-edge research and contributing new perspectives to his field. He brings a unique combination of technical expertise and a collaborative mindset to his role in Dr. Xiaojie Qiu’s lab.
