Dana Carolyn Paquin

All Publications

• Strategic Treatment Interruptions During Imatinib Treatment of Chronic Myelogenous Leukemia BULLETIN OF MATHEMATICAL BIOLOGY Paquin, D., Kim, P. S., Lee, P. P., Levy, D. 2011; 73 (5): 1082-1100

  Abstract

  Although imatinib is an effective treatment for chronic myelogenous leukemia (CML), and nearly all patients treated with imatinib attain some form of remission, imatinib does not completely eliminate leukemia. Moreover, if the imatinib treatment is stopped, most patients eventually relapse (Cortes et al. in Clin. Cancer Res. 11:3425-3432, 2005). In Kim et al. (PLoS Comput. Biol. 4(6):e1000095, 2008), the authors presented a mathematical model for the dynamics of CML under imatinib treatment that incorporates the anti-leukemia immune response. We use the mathematical model in Kim et al. (PLoS Comput. Biol. 4(6):e1000095, 2008) to study and numerically simulate strategic treatment interruptions as a potential therapeutic strategy for CML patients. We present the results of numerous simulated treatment programs in which imatinib treatment is temporarily stopped to stimulate and leverage the anti-leukemia immune response to combat CML. The simulations presented in this paper imply that treatment programs that involve strategic treatment interruptions may prevent leukemia from relapsing and may prevent remission for significantly longer than continuous imatinib treatment. Moreover, in many cases, strategic treatment interruptions may completely eliminate leukemic cells from the body. Thus, strategic treatment interruptions may be a feasible clinical approach to enhancing the effects of imatinib treatment for CML. We study the effects of both the timing and the duration of the treatment interruption on the results of the treatment. We also present a sensitivity analysis of the results to the parameters in the mathematical model.

  View details for DOI 10.1007/s11538-010-9553-0

  View details for Web of Science ID 000289246600007

  View details for PubMedID 20532990

• Multiscale registration of planning CT and daily cone beam CT images for adaptive radiation therapy MEDICAL PHYSICS Paquin, D., Levy, D., Xing, L. 2009; 36 (1): 4-11

  Abstract

  Adaptive radiation therapy (ART) is the incorporation of daily images in the radiotherapy treatment process so that the treatment plan can be evaluated and modified to maximize the amount of radiation dose to the tumor while minimizing the amount of radiation delivered to healthy tissue. Registration of planning images with daily images is thus an important component of ART. In this article, the authors report their research on multiscale registration of planning computed tomography (CT) images with daily cone beam CT (CBCT) images. The multiscale algorithm is based on the hierarchical multiscale image decomposition of E. Tadmor, S. Nezzar, and L. Vese [Multiscale Model. Simul. 2(4), pp. 554-579 (2004)]. Registration is achieved by decomposing the images to be registered into a series of scales using the (BV, L2) decomposition and initially registering the coarsest scales of the image using a landmark-based registration algorithm. The resulting transformation is then used as a starting point to deformably register the next coarse scales with one another. This procedure is iterated at each stage using the transformation computed by the previous scale registration as the starting point for the current registration. The authors present the results of studies of rectum, head-neck, and prostate CT-CBCT registration, and validate their registration method quantitatively using synthetic results in which the exact transformations our known, and qualitatively using clinical deformations in which the exact results are not known.

  View details for DOI 10.1118/1.3026602

  View details for Web of Science ID 000262105200002

  View details for PubMedID 19235367

  View details for PubMedCentralID PMC2739311

• Multiscale deformable registration of noisy medical images MATHEMATICAL BIOSCIENCES AND ENGINEERING Paquin, D., Levy, D., Xing, L. 2008; 5 (1): 125-144

  Abstract

  Multiscale image registration techniques are presented for the registration of medical images using deformable registration models. The techniques are particularly effective for registration problems in which one or both of the images to be registered contains significant levels of noise. A brief overview of existing deformable registration techniques is presented, and experiments using B-spline free-form deformation registration models demonstrate that ordinary deformable registration techniques fail to produce accurate results in the presence of significant levels of noise. The hierarchical multiscale image decomposition described in E. Tadmor, S. Nezzar, and L. Vese's, "A multiscale image representation using hierarchical (BV;L2) decompositions" (Multiscale Modeling and Simulations, 2 (2004): 4, pp. 554-579) is reviewed, and multiscale image registration algorithms are developed based on the multiscale decomposition. Accurate registration of noisy images is achieved by obtaining a hierarchical multiscale decomposition of the images and iteratively registering the resulting components. This approach enables a successful regstration of images that contain noise levels well beyond the level at which ordinary deformable registration fails. Numerous image registration experiments demonstrate the accuracy and efficiency of the multiscale registration techniques.

  View details for Web of Science ID 000254377900008

  View details for PubMedID 18193935

• Hybrid multiscale landmark and deformable image registration MATHEMATICAL BIOSCIENCES AND ENGINEERING Paquin, D., Levy, D., Xing, L. 2007; 4 (4): 711-737

  Abstract

  An image registration technique is presented for the registration of medical images using a hybrid combination of coarse-scale landmark and B-splines deformable registration techniques. The technique is particularly effective for registration problems in which the images to be registered contain large localized deformations. A brief overview of landmark and deformable registration techniques is presented. The hierarchical multiscale image decomposition of E. Tadmor, S. Nezzar, and L. Vese, A multiscale image representation using hierarchical (BV;L(2)) decompositions, Multiscale Modeling and Simulations, vol. 2, no. 4, pp. 554{579, 2004, is reviewed, and an image registration algorithm is developed based on combining the multiscale decomposition with landmark and deformable techniques. Successful registration of medical images is achieved by first obtaining a hierarchical multiscale decomposition of the images and then using landmark-based registration to register the resulting coarse scales. Corresponding bony structure landmarks are easily identified in the coarse scales, which contain only the large shapes and main features of the image. This registration is then fine tuned by using the resulting transformation as the starting point to deformably register the original images with each other using an iterated multiscale B-splines deformable registration technique. The accuracy and efficiency of the hybrid technique is demonstrated with several image registration case studies in two and three dimensions. Additionally, the hybrid technique is shown to be very robust with respect to the location of landmarks and presence of noise.

  View details for Web of Science ID 000249414800011

  View details for PubMedID 17924721

• Multiscale image registration MATHEMATICAL BIOSCIENCES AND ENGINEERING Paquin, D., Levy, D., Schreibmann, E., Xing, L. 2006; 3 (2): 389-418

  Abstract

  A multiscale image registration technique is presented for the registration of medical images that contain significant levels of noise. An overview of the medical image registration problem is presented, and various registration techniques are discussed. Experiments using mean squares, normalized correlation, and mutual information optimal linear registration are presented that determine the noise levels at which registration using these techniques fails. Further experiments in which classical denoising algorithms are applied prior to registration are presented, and it is shown that registration fails in this case for significantly high levels of noise, as well. The hierarchical multiscale image decomposition of E. Tadmor, S. Nezzar, and L. Vese [20] is presented, and accurate registration of noisy images is achieved by obtaining a hierarchical multiscale decomposition of the images and registering the resulting components. This approach enables successful registration of images that contain noise levels well beyond the level at which ordinary optimal linear registration fails. Image registration experiments demonstrate the accuracy and efficiency of the multiscale registration technique, and for all noise levels, the multiscale technique is as accurate as or more accurate than ordinary registration techniques.

  View details for Web of Science ID 000235978000008

  View details for PubMedID 20361831