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  • FinisherSC: a repeat-aware tool for upgrading de novo assembly using long reads. Bioinformatics Lam, K., LaButti, K., Khalak, A., Tse, D. 2015; 31 (19): 3207-3209

    Abstract

    We introduce FinisherSC, a repeat-aware and scalable tool for upgrading de novo assembly using long reads. Experiments with real data suggest that FinisherSC can provide longer and higher quality contigs than existing tools while maintaining high concordance.The tool and data are available and will be maintained at http://kakitone.github.io/finishingTool/: dntse@stanford.eduSupplementary data are available at Bioinformatics online.

    View details for DOI 10.1093/bioinformatics/btv280

    View details for PubMedID 26040454

  • An Optimal and Distributed Method for Voltage Regulation in Power Distribution Systems IEEE TRANSACTIONS ON POWER SYSTEMS Zhang, B., Lam, A. Y., Dominguez-Garcia, A. D., Tse, D. 2015; 30 (4): 1714-1726
  • Feasibility of Interference Alignment for the MIMO Interference Channel IEEE TRANSACTIONS ON INFORMATION THEORY Bresler, G., Cartwright, D., Tse, D. 2014; 60 (9): 5573-5586
  • Network Risk Limiting Dispatch: Optimal Control and Price of Uncertainty IEEE TRANSACTIONS ON AUTOMATIC CONTROL Zhang, B., Rajagopal, R., Tse, D. 2014; 59 (9): 2442-2456
  • Polytope Codes Against Adversaries in Networks IEEE TRANSACTIONS ON INFORMATION THEORY Kosut, O., Tong, L., Tse, D. N. 2014; 60 (6): 3308-3344
  • Geometry of Power Flows and Optimization in Distribution Networks IEEE TRANSACTIONS ON POWER SYSTEMS Lavaei, J., Tse, D., Zhang, B. 2014; 29 (2): 572-583
  • Spatial Degrees of Freedom of Large Distributed MIMO Systems and Wireless Ad Hoc Networks IEEE JOURNAL ON SELECTED AREAS IN COMMUNICATIONS Oezguer, A., Leveque, O., Tse, D. 2013; 31 (2): 202-214
  • Risk Limiting Dispatch in Congested Networks 50th Annual Allerton Conference on Communication, Control, and Computing (Allerton) Rajagopal, R., Tse, D., Zhang, B. IEEE. 2013: 1900–1907
  • Geometry of Power Flows in Tree Networks General Meeting of the IEEE-Power-and-Energy-Society Lavaei, J., Tse, D., Zhang, B. IEEE. 2012
  • Degree-of-Freedom Gain From Using Polarimetric Antenna Elements IEEE TRANSACTIONS ON INFORMATION THEORY Poon, A. S., Tse, D. N. 2011; 57 (9): 5695-5709
  • Interference Networks With Point-to-Point Codes IEEE TRANSACTIONS ON INFORMATION THEORY Baccelli, F., El Gamal, A., Tse, D. N. 2011; 57 (5): 2582-2596
  • Information-Theoretic Operating Regimes of Large Wireless Networks IEEE TRANSACTIONS ON INFORMATION THEORY Ozgur, A., Johari, R., Tse, D. N., Leveque, O. 2010; 56 (1): 427-437
  • Information Theoretic Operating Regimes of Large Wireless Networks IEEE International Symposium on Information Theory Oezguer, A., Johari, R., Tse, D., Leveque, O. IEEE. 2008: 186–190
  • Approximate capacity of the two-way relay channel: A deterministic approach 46th Annual Allerton Conference on Communication, Control and Computing Avestimehr, A. S., Sezgin, A., Tse, D. N. IEEE. 2008: 1582–1589
  • Channel uncertainty in ultra-wideband communication systems IEEE TRANSACTIONS ON INFORMATION THEORY Porrat, D., Tse, D. N., Nacu, S. 2007; 53 (1): 194-208