Honors & Awards


  • Stanford Graduate Fellow, Stanford VPGE (2016-2019)

All Publications


  • Flexible and efficient optimization of quantitative sequences using automatic differentiation of Bloch simulations. Magnetic resonance in medicine Lee, P. K., Watkins, L. E., Anderson, T. I., Buonincontri, G., Hargreaves, B. A. 2019

    Abstract

    PURPOSE: To investigate a computationally efficient method for optimizing the Cramer-Rao Lower Bound (CRLB) of quantitative sequences without using approximations or an analytical expression of the signal.METHODS: Automatic differentiation was applied to Bloch simulations and used to optimize several quantitative sequences without the need for approximations or an analytical expression. The results were validated with in vivo measurements and comparisons to prior art. Multi-echo spin echo and DESPO T 1 were used as benchmarks to verify the CRLB implementation. The CRLB of the Magnetic Resonance Fingerprinting (MRF) sequence, which has a complicated analytical formulation, was also optimized using automatic differentiation.RESULTS: The sequence parameters obtained for multi-echo spin echo and DESPO T 1 matched results obtained using conventional methods. In vivo, MRF scans demonstrate that the CRLB optimization obtained with automatic differentiation can improve performance in presence of white noise. For MRF, the CRLB optimization converges in 1.1 CPU hours for N TR = 400 and has O ( N TR ) asymptotic runtime scaling for the calculation of the CRLB objective and gradient.CONCLUSIONS: Automatic differentiation can be used to optimize the CRLB of quantitative sequences without using approximations or analytical expressions. For MRF, the runtime is computationally efficient and can be used to investigate confounding factors as well as MRF sequences with a greater number of repetitions.

    View details for DOI 10.1002/mrm.27832

    View details for PubMedID 31131500

  • Acellular and cellular high-density, collagen-fibril constructs with suprafibrillar organization BIOMATERIALS SCIENCE Blum, K. M., Novak, T., Watkins, L., Neu, C. P., Wallace, J. M., Bart, Z. R., Voytik-Harbin, S. L. 2016; 4 (4): 711-723

    View details for DOI 10.1039/c5bm00443h

    View details for Web of Science ID 000372997600016