Biswadeep Khan

All Publications

• Ultra-high density perovskite nanowire array memristor-based multi-layer perceptron. Nature communications Poddar, S., Khan, B., Kumar, S., Li, J., Ding, Y., Chen, Z., Wang, K., Jin, C., Wei, J., Peng, Z., Jaesiri, O. M., Chan, M., Semmelhack, J. L., Fan, Z. 2026

  Abstract

  Passive memristor crossbars present a high-density and low-power platform for neuromorphic computing. Although perovskite memristors present advantages such as re-configurability between electrochemical metallization and valence change mechanisms compared to traditional oxides, they face issues with uniformity, variability, and filamentary instability, which impede their large-scale integration. This work demonstrates that these limitations are overcome by a three-dimensional perovskite nanowire array architecture, where a precisely engineered ITO barrier is instrumental in maintaining controlled, analog conductance modulation. The resulting memristors exhibit 139 non-overlapping Ohmic conduction states within an optimal analog range (10-100 µS), long retention ( > 10⁶ s), endurance exceeding 4 × 10⁵ cycles, an asymmetric non-linearity factor of 0.3, and minimal variability (device-to-device <5%, cycle-to-cycle <1.5%). The memristors are further integrated into a 64 × 64 crossbar array and utilized in developing a fully integrated multi-layer perceptron for zebrafish head and jaw movement analysis, thereby establishing a scalable pathway for robust perovskite-based neuromorphic hardware.

  View details for DOI 10.1038/s41467-026-71372-5

  View details for PubMedID 42204146

• Binocular integration of prey stimuli in the zebrafish visual system CURRENT BIOLOGY Tian, G., Lam, T., Yan, G., He, Y., Khan, B., Qu, J. Y., Semmelhack, J. L. 2025; 35 (13)

  View details for DOI 10.1016/j.cub.2025.05.063

  View details for Web of Science ID 001531274200024

  View details for PubMedID 40578356

• The visuomotor transformations underlying target-directed behavior. Proceedings of the National Academy of Sciences of the United States of America Zhao, P., Tong, Y., Lazarte, I. P., Khan, B., Tian, G., Chen, K. K., Lam, T. K., Hu, Y., Semmelhack, J. L. 2025; 122 (13): e2416215122

  Abstract

  The visual system can process diverse stimuli and make the decision to execute appropriate behaviors, but it remains unclear where and how this transformation takes place. Innate visually evoked behaviors such as hunting, freezing, and escape are thought to be deeply conserved, and have been described in a range of species from insects to humans. We found that zebrafish larvae would respond to predator-like visual stimuli with immobility and bradycardia, both hallmarks of freezing, in a head-fixed behavioral paradigm. We then imaged the zebrafish visual system while larvae responded to different visual stimuli with hunting, freezing, and escape behaviors and systematically identified visually driven neurons and behaviorally correlated sensorimotor neurons. Our analyses indicate that within the optic tectum, broadly tuned sensory neurons are functionally correlated with sensorimotor neurons which respond specifically during one behavior, indicating that it contains suitable information for sensorimotor transformation. We also identified sensorimotor neurons in four other areas downstream of the tectum, and these neurons are also specific for one behavior, indicating that the segregation of the pathways continues in other areas. While our findings shed light on how sensorimotor neurons may integrate visual inputs, further investigation will be required to determine how sensorimotor neurons in different regions interact and where the decision to behave is made.

  View details for DOI 10.1073/pnas.2416215122

  View details for PubMedID 40127271

• YTCommentVerse: A Multi-Category Multi-Lingual YouTube Comment Corpus Dutta, H., Khan, B., ACM ASSOC COMPUTING MACHINERY. 2025: 6351-6355

  View details for DOI 10.1145/3746252.3761629

  View details for Web of Science ID 001661448300722

• The roles of blur and eye convergence in distance estimation in larval zebrafish. Journal of neurogenetics Khan, B., Semmelhack, J. L. 2024: 1-6

  Abstract

  Animals use an array of visual cues to gauge distance, and their underlying neural mechanisms remain largely unknown. Zebrafish larvae execute different hunting behaviors depending on distance to the prey, providing a simple model system in which to study this process. To identify distance cues, we presented equivalent prey stimuli at increasing distance and recorded hunting behaviors. We found that the initial convergence angle was lower for more distant prey, suggesting that they are able to gauge distance to the prey via monocular cues. We investigated blur as a possible monocular cue, and found that by artificially blurring the stimulus, we were able to reduce initial convergence and strike probability. This implicates blur as a distance cue in zebrafish prey capture, adds to our knowledge of how larvae are able to visually target and accurately capture prey.

  View details for DOI 10.1080/01677063.2024.2432033

  View details for PubMedID 39617951

• Zebrafish larvae use stimulus intensity and contrast to estimate distance to prey. Current biology : CB Khan, B., Jaesiri, O. M., Lazarte, I. P., Li, Y., Tian, G., Zhao, P., Zhao, Y., Ho, V. D., Semmelhack, J. L. 2023

  Abstract

  The ability to determine the distance to objects is an important feature of most visual systems, but little is known about the neuronal mechanisms for distance estimation. Larval zebrafish execute different visual behaviors depending on distance; at medium distances, they converge their eyes and approach, but when the prey is close enough, they execute a strike and suck the prey into their mouths. To study distance estimation, we developed a head-fixed strike assay. We found that we could evoke strike behavior in head-fixed larvae and quantify head movements to classify the behavior as a strike. Strikes were dependent on distance to prey, allowing us to use them to study distance estimation. Light intensity is rapidly attenuated as it travels through water, so we hypothesized that larvae could use intensity as a distance cue. We found that increasing stimulus intensity could cause larvae to strike at prey that would normally be out of range, and decreasing the intensity could lower the strike rate even for very proximal stimuli. In addition, stimulus contrast is a key parameter, and this could allow larvae to estimate distance over the range of natural illumination. Finally, we presented prey in the binocular vs. monocular visual field and found that monocular prey did evoke strikes, although the binocular input produced more. These results suggest that strike behavior is optimally evoked by bright UV dots in the binocular zone with minimal UV background light and provide a foundation to study the neuronal mechanisms of distance estimation.

  View details for DOI 10.1016/j.cub.2023.06.046

  View details for PubMedID 37437573