Bio


Dr. Leonor García-Bayona is an Assistant Professor in the Department of Microbiology and Immunology at Stanford University. Leonor grew up in Bogota, Colombia, where she completed her undergraduate studies in Chemical Engineering and Microbiology at the University of the Andes. She did her Ph.D. in Microbiology at the Massachusetts Institute of Technology, under the supervision of Dr. Michael Laub, studying the genetics and cell physiology of a new interbacterial antagonism system. She then became a postdoctoral fellow in the lab of Dr. Laurie Comstock, first at Brigham and Women's Hospital/Harvard Medical School and later at the University of Chicago. In the Comstock lab, Leonor trained in intestinal anaerobe microbiology, advanced microscopy and microbiome computational analyses. The García-Bayona lab studies the role of mobile genes in the community interactions of the human intestinal microbiota, and evaluates how this knowledge could be harnessed for targeted therapeutic interventions.

Academic Appointments


Current Research and Scholarly Interests


The human microbiome is evolving rapidly (i.e. over our lifetimes) following changes in modern lifestyles, especially in industrialized countries. The García-Bayona lab seeks to understand how horizontal gene transfer shapes interactions within the human intestinal microbiota and what the implications of this widespread phenomenon are for community properties relevant to human health (for example, the ability of the gut community to recover after antibiotic treatment). There is currently only a superficial understanding of the different cellular roles of most exchanged genes, the mechanisms governing their spread and their effect community dynamics. Our lab works on bridging the existing gap between the current systems-level observational studies and a mechanistic understanding through bacterial genetics and physiology. We take a bottom-up approach (from genes to communities), incorporating genetics, metagenomics, population analyses and experimental evolution in tractable bacterial consortia.

2024-25 Courses


Stanford Advisees


All Publications


  • A ubiquitous mobile genetic element changes the antagonistic weaponry of a human gut symbiont SCIENCE Sheahan, M. L., Flores, K., Coyne, M. J., Garcia-Bayona, L., Chatzidaki-Livanis, M., Holst, A. Q., Smith, R. C., Sundararajan, A., Barquera, B., Comstock, L. E. 2024; 386 (6720): 414-420

    Abstract

    DNA transfer is ubiquitous in the human gut microbiota, especially among species of the order Bacteroidales. In silico analyses have revealed hundreds of mobile genetic elements shared between these species, yet little is known about the phenotypes they encode, their effects on fitness, or pleiotropic consequences for the recipient's genome. In this work, we show that acquisition of a ubiquitous integrative conjugative element (ICE) encoding a type VI secretion system (T6SS) shuts down the native T6SS of Bacteroides fragilis. Despite inactivating this T6SS, ICE acquisition increases the fitness of the B. fragilis transconjugant over its progenitor by arming it with the new T6SS. DNA transfer causes the strain to change allegiances so that it no longer targets ecosystem members with the same element yet is armed for communal defense.

    View details for DOI 10.1126/science.adj9504

    View details for Web of Science ID 001348382900033

    View details for PubMedID 39446952