Stephen Monismith
Obayashi Professor in the School of Engineering and Professor of Oceans
Civil and Environmental Engineering
Bio
Stephen Monismith's research in environmental and geophysical fluid dynamics involves the application of fluid mechanics principles to the analysis of flow processes operating in rivers, lakes, estuaries and the oceans, with a particular interest in the ecological impacts of those flows. His current research includes studies of estuarine hydrodynamics and mixing processes, flows over coral reefs and on the inner shelf, turbulence in density stratified fluids, and physical-biological interactions in phytoplankton and benthic systems. Current and past projects include field and computational work on wave-driven flows over coral reefs, stratified turbulence due to shoaling internal waves, benthic grazing on coral reefs and in kelp forests, dispersion in complex estuarine tidal flows, and lab and computational studies of flows through coral colonies. He is also involved with various scientific panels focusing on the San Francisco Bay/Delta including an NRC committee that examined the sustainability of the Delta as a water supply system and as an ecosystem.
Professor Monismith is currently director of the Environmental Fluid Mechanics Laboratory. He is the Obayashi Professor in the School of Engineering. Prior to coming to Stanford, he spent three years in Perth (Australia) as a research fellow at the University of Western Australia.
Academic Appointments
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Professor, Civil and Environmental Engineering
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Professor, Oceans
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Member, Bio-X
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Affiliate, Stanford Woods Institute for the Environment
Administrative Appointments
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Chair, Civil and Environmental Engineering (2009 - Present)
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Chair, Committee on Research (2008 - 2011)
Honors & Awards
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Presidential Young Investigator, NSF (1989)
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Eugene L. Grant teaching award, Stanford School of Engineering (2002)
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Borland Hydraulics Lecture, AGU (2011)
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Pritchard Award, Coastal and Estuarine Research Federation (2012)
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Member, Academy of Distinguished Alumni of UC Berkeley Civil Engineering (2014)
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Straub award lecture, University of Minnesota (2015)
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Overseas Visiting Fellow, Churchill College, Cambridge University (2016)
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Fellow, American Physical Society (Division of Fluid Dynamics (2019)
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Steve and Sylvia Burges Endowed Visiting Professor, University of Washington (2019)
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Member, National Academy of Engineering (2022)
Boards, Advisory Committees, Professional Organizations
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Associate editor, Limnology and Oceanography Letters (2020 - Present)
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Member, Advisory Council, Marine Science Center, Okinawa Institute of Science and Technology (2016 - 2017)
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Associate Editor, Estuaries and Coasts (2014 - Present)
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Member, Delta Science Advisory Board (2014 - Present)
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Member, Advisory Council, Dept. of Civil and Environmental Eng., UC Berkeley (2013 - 2018)
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Member, NRC Committee on the Independent Scientific Review of the Everglades Restoration Progress (2012 - 2014)
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Member, NRC Committee on Sustainable Water and Environmental Management in the California Bay-Delta (2010 - 2012)
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Chair, Science Advisory Group, Interagency Ecological Agency (2002 - Present)
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Member, Review Panel for CALFED Environmental Water Account (2001 - 2007)
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Associate Editor, LImnology and Oceangraphy (1997 - 2002)
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Member, ASCE Task Committee for research needs in hydraulic engineering (1992 - 1993)
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Chair, ASCE Task Committee for an Album of Environmental Transport Processes (1990 - 1992)
Professional Education
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BS, UC Berkeley, Civil Engineering (1977)
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MS, UC Berkeley, Civil Engineering (1979)
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PhD, UC Berkeley, Civil Engineering (1983)
Current Research and Scholarly Interests
Hydrodynamics of lakes, estuaries, coral reefs, kelp forests and the coastal ocean
2024-25 Courses
- From the Foothills to the Bay: Perspectives on the Sacramento River & SF Bay/Delta
CEE 86Q, OCEANS 86Q (Aut) - Transport and Mixing in Surface Water Flows
CEE 262B, OCEANS 262B (Win) -
Independent Studies (21)
- Advanced Engineering Informatics
CEE 381 (Aut, Win, Spr) - Advanced Engineering Problems
CEE 399 (Aut, Win, Spr) - Advanced Topics in Environmental Fluid Mechanics and Hydrology
CEE 365A (Aut) - Advanced Topics in Environmental Fluid Mechanics and Hydrology
CEE 365B (Win) - Advanced Topics in Environmental Fluid Mechanics and Hydrology
CEE 365C (Spr) - Directed Individual Study in Earth Systems
EARTHSYS 297 (Aut, Win, Spr) - Directed Reading in Environment and Resources
ENVRES 398 (Aut, Win, Spr) - Directed Reading or Special Studies in Civil Engineering
CEE 198 (Aut, Win, Spr) - Directed Research
EARTHSYS 250 (Aut, Win, Spr) - Directed Research in Environment and Resources
ENVRES 399 (Aut, Win, Spr) - Environmental Research
CEE 370B (Win) - Environmental Research
CEE 370C (Spr) - Honors Program in Earth Systems
EARTHSYS 199 (Aut, Win, Spr) - Independent Project in Civil and Environmental Engineering
CEE 199L (Aut, Win, Spr) - Independent Project in Civil and Environmental Engineering
CEE 299L (Aut, Win, Spr) - Independent Study in Civil Engineering for CEE-MS Students
CEE 299 (Aut, Win, Spr) - Report on Civil Engineering Training
CEE 398 (Aut, Win, Spr) - Research
OCEANS 300 (Aut, Win, Spr) - Research Proposal Writing in Environmental Engineering and Science
CEE 377 (Aut, Win, Spr) - Undergraduate Honors Thesis
CEE 199H (Aut, Win, Spr) - Undergraduate Research in Civil and Environmental Engineering
CEE 199 (Aut, Win, Spr)
- Advanced Engineering Informatics
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Prior Year Courses
2023-24 Courses
- From the hills to the sea
OSPOXFRD 86 (Aut) - Get to Know Your Oceans
OCEANS 300A (Aut) - Ocean Waves
CEE 262F (Spr) - Transport and Mixing in Surface Water Flows
CEE 262B (Win)
2022-23 Courses
- Environmental Engineering Seminar
CEE 269B (Win) - Ocean Waves
CEE 262F (Aut) - Seminar in Fluid Mechanics
ENGR 298 (Win) - Topics in wave-turbulence interactions
CEE 363W (Spr) - Transport and Mixing in Surface Water Flows
CEE 262B (Win)
2021-22 Courses
- Approaching Palau: Preparation and Research Ideation and Development
CEE 40, ESS 40 (Spr) - Corals of Palau: Ecology, the Physical Environment, and Reefs at Risk
OSPGEN 53 (Sum) - From the hills to the sea
OSPOXFRD 86 (Aut) - Transport and Mixing in Surface Water Flows
CEE 262B (Win)
- From the hills to the sea
Stanford Advisees
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Doctoral Dissertation Reader (AC)
Jenny Hamilton, Jamie Hilditch -
Doctoral Dissertation Advisor (AC)
Elisa Boles -
Master's Program Advisor
Sophie Benmore, Katelyn Magallon, Yimin Xu -
Doctoral (Program)
Annie Rosen, Tanner Shinkle
All Publications
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Influence of kelp forests on flow around headlands.
The Science of the total environment
2022: 153952
Abstract
Kelp forests affect coastal circulation but their influence on upwelling around headlands is poorly understood. Tidal-cycle surveys off two headlands with contrasting kelp coverage illustrated the influence of kelp forests on headland upwelling. Underway acoustic Doppler current and backscatter profiles were collected simultaneously to surface water temperature. Surveys occurred along three off-headland transects in July 25-29, 2018, off Isla Natividad, located midway on the western coast of the Baja California peninsula. Flows and water temperature distributions off the headland with no kelp coverage were consistent with headland upwelling. In contrast, the kelp around the headland with dense coverage: 1) attenuated the ambient flow; 2) favored an increase in effective radius of flow curvature; 3) promoted flow ducting, which consists of enhancing flow through channels unobstructed by kelp; and 4) suppressed headland upwelling. Kelp suppressed upwelling by channeling the flow away from the headland, keeping nearshore waters warmer than offshore. PLAIN LANGUAGE ABSTRACT: This study documents a way in which biology can affect physics in coastal ocean environments. In particular, the study describes how a kelp forest suppresses the upward pumping of cool subsurface waters that is typically found around headlands. Such suppression of subsurface waters injection occurs via a process that we refer to as 'flow ducting.' In flow ducting, coastal flows are channelized through kelp gaps, concentrated in bands <30 m wide, and kept away from the morphological influences of a headland. This ducting is analogous to the tortuous flow through porous media.
View details for DOI 10.1016/j.scitotenv.2022.153952
View details for PubMedID 35189222
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Limited biogeochemical modification of surface waters by kelp forest canopies: Influence of kelp metabolism and site-specific hydrodynamics
LIMNOLOGY AND OCEANOGRAPHY
2021
View details for DOI 10.1002/lno.11999
View details for Web of Science ID 000731867700001
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Characterization of the biological, physical, and chemical properties of a toxic thin layer in a temperate marine system
MARINE ECOLOGY PROGRESS SERIES
2021; 678: 17-35
View details for DOI 10.3354/meps13879
View details for Web of Science ID 000720333500002
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Seasonal particle responses to near-bed shear stress in a shallow, wave- and current-driven environment
LIMNOLOGY AND OCEANOGRAPHY LETTERS
2021
View details for DOI 10.1002/lol2.10221
View details for Web of Science ID 000713877600001
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Variable coastal hypoxia exposure and drivers across the southern California Current.
Scientific reports
2021; 11 (1): 10929
Abstract
Declining oxygen is one of the most drastic changes in the ocean, and this trend is expected to worsen under future climate change scenarios. Spatial variability in dissolved oxygen dynamics and hypoxia exposures can drive differences in vulnerabilities of coastal ecosystems and resources, but documentation of variability at regional scales is rare in open-coast systems. Using a regional collaborative network of dissolved oxygen and temperature sensors maintained by scientists and fishing cooperatives from California, USA, and Baja California, Mexico, we characterize spatial and temporal variability in dissolved oxygen and seawater temperature dynamics in kelp forest ecosystems across 13° of latitude in the productive California Current upwelling system. We find distinct latitudinal patterns of hypoxia exposure and evidence for upwelling and respiration as regional drivers of oxygen dynamics, as well as more localized effects. This regional and small-scale spatial variability in dissolved oxygen dynamics supports the use of adaptive management at local scales, and highlights the value of collaborative, large-scale coastal monitoring networks for informing effective adaptation strategies for coastal communities and fisheries in a changing climate.
View details for DOI 10.1038/s41598-021-89928-4
View details for PubMedID 34035327
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Phase-Resolved Wave Boundary Layer Dynamics in a Shallow Estuary
GEOPHYSICAL RESEARCH LETTERS
2021; 48 (8)
View details for DOI 10.1029/2020GL092251
View details for Web of Science ID 000672324900018
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Cohesive Sediment Erosion in a Combined Wave-Current Boundary Layer
JOURNAL OF GEOPHYSICAL RESEARCH-OCEANS
2021; 126 (2)
View details for DOI 10.1029/2020JC016655
View details for Web of Science ID 000624429800035
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Response of Lower Sacramento River phytoplankton to high-ammonium wastewater effluent
Elementa: Science of the Anthropocene
2021; 9(1)
View details for DOI 10.1525/elementa.2021.040
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The setup and relaxation of spring upwelling in a deep, rotationally influenced lake
LIMNOLOGY AND OCEANOGRAPHY
2020
View details for DOI 10.1002/lno.11673
View details for Web of Science ID 000601604200001
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Drivers of Biogeochemical Variability in a Central California Kelp Forest: Implications for Local Amelioration of Ocean Acidification
JOURNAL OF GEOPHYSICAL RESEARCH-OCEANS
2020; 125 (11)
View details for DOI 10.1029/2020JC016320
View details for Web of Science ID 000595724300028
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Bottom Drag Varies Seasonally With Biological Roughness
GEOPHYSICAL RESEARCH LETTERS
2020; 47 (15)
View details for DOI 10.1029/2020GL088425
View details for Web of Science ID 000560376100073
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Sediment-Induced Stratification in an Estuarine Bottom Boundary Layer
JOURNAL OF GEOPHYSICAL RESEARCH-OCEANS
2020; 125 (8)
View details for DOI 10.1029/2019JC016022
View details for Web of Science ID 000577126400046
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Stokes drift: theory and experiments
JOURNAL OF FLUID MECHANICS
2020; 884
View details for DOI 10.1017/jfm.2019.891
View details for Web of Science ID 000500560600001
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Ocean acidification causes variable trait shifts in a coral species.
Global change biology
2020
Abstract
High pCO2 habitats and their populations provide an unparalleled opportunity to assess how species may survive under future ocean acidification conditions, and help to reveal the traits that confer tolerance. Here we utilize a unique CO2 vent system to study the effects of exposure to elevated pCO2 on trait-shifts observed throughout natural populations of Astroides calycularis, an azooxanthellate scleractinian coral endemic to the Mediterranean. Unexpected shifts in skeletal and growth patterns were found. Colonies shifted to a skeletal phenotype characterized by encrusting morphology, smaller size, reduced coenosarc tissue, fewer polyps, and less porous and denser skeletons at low pH. Interestingly, while individual polyps calcified more and extended faster at low pH, whole colonies found at low pH site calcified and extended their skeleton at the same rate as did those at ambient pH sites. Transcriptomic data revealed strong genetic differentiation among local populations of this warm water species whose distribution range is currently expanding northward. We found excess differentiation in the CO2 vent population for genes central to calcification, including genes for calcium management (calmodulin, calcium-binding proteins), pH regulation (V-type proton ATPase), and inorganic carbon regulation (carbonic anhydrase). Combined, our results demonstrate how coral populations can persist in high pCO2 environments, making this system a powerful candidate for investigating acclimatization and local adaptation of organisms to global environmental change.
View details for DOI 10.1111/gcb.15372
View details for PubMedID 33002274
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Turbulence and Coral Reefs.
Annual review of marine science
2020
Abstract
The interaction of coral reefs, both chemically and physically, with the surrounding seawater is governed, at the smallest scales, by turbulence. Here, we review recent progress in understanding turbulence in the unique setting of coral reefs-how it influences flow and the exchange of mass and momentum both above and within the complex geometry of coral reef canopies. Flow above reefs diverges from canonical rough boundary layers due to their large and highly heterogeneous roughness and the influence of surface waves. Within coral canopies, turbulence is dominated by large coherent structures that transport momentum both into and away from the canopy, but it is also generated at smaller scales as flow is forced to move around branches or blades, creating wakes. Future work interpreting reef-related observations or numerical models should carefully consider the influence that spatial variation has on momentum and scalar flux. Expected final online publication date for the Annual Review of Marine Science, Volume 13 is January 3, 2021. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.
View details for DOI 10.1146/annurev-marine-042120-071823
View details for PubMedID 32762591
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Circulation patterns in a shallow tropical reservoir: Observations and modeling
JOURNAL OF HYDRO-ENVIRONMENT RESEARCH
2019; 27: 75–86
View details for DOI 10.1016/j.jher.2019.09.002
View details for Web of Science ID 000500382200006
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Instrumentation for direct measurements of wave-driven flow over a fringing reef crest
LIMNOLOGY AND OCEANOGRAPHY-METHODS
2019
View details for DOI 10.1002/lom3.10337
View details for Web of Science ID 000492391000001
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Vertical mixing in a shallow tropical reservoir
LIMNOLOGY
2019; 20 (3): 279–96
View details for DOI 10.1007/s10201-019-00577-z
View details for Web of Science ID 000475646700004
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Observations of Near-Bed Shear Stress in a Shallow, Wave- and Current-Driven Flow
JOURNAL OF GEOPHYSICAL RESEARCH-OCEANS
2019; 124 (8): 6323–44
View details for DOI 10.1029/2019JC015165
View details for Web of Science ID 000490464200053
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Flow and Drag in a Seagrass Bed
JOURNAL OF GEOPHYSICAL RESEARCH-OCEANS
2019; 124 (3): 2153–63
View details for DOI 10.1029/2018JC014862
View details for Web of Science ID 000464656900043
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Harnessing marine microclimates for climate change adaptation and marine conservation
CONSERVATION LETTERS
2019; 12 (2)
View details for DOI 10.1111/conl.12609
View details for Web of Science ID 000465040500001
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Wave-induced setup and wave-driven current over Quasi-2DH reef-lagoon-channel systems
COASTAL ENGINEERING
2018; 138: 113–25
View details for DOI 10.1016/j.coastaleng.2018.04.009
View details for Web of Science ID 000435063100009
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Temporal Variability in Thermally Driven Cross-Shore Exchange: The Role of Semidiurnal Tides
JOURNAL OF PHYSICAL OCEANOGRAPHY
2018; 48 (7): 1513–31
View details for DOI 10.1175/JPO-D-17-0257.1
View details for Web of Science ID 000437725400001
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Connecting Flow over Complex Terrain to Hydrodynamic Roughness on a Coral Reef
JOURNAL OF PHYSICAL OCEANOGRAPHY
2018; 48 (7): 1567–87
View details for DOI 10.1175/JPO-D-18-0013.1
View details for Web of Science ID 000438704600001
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Mixing Efficiency in the Presence of Stratification: When Is It Constant?
GEOPHYSICAL RESEARCH LETTERS
2018; 45 (11): 5627–34
View details for DOI 10.1029/2018GL077229
View details for Web of Science ID 000436249900046
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Three-Dimensional Modeling of Fine Sediment Transport by Waves and Currents in a Shallow Estuary
JOURNAL OF GEOPHYSICAL RESEARCH-OCEANS
2018; 123 (6): 4177–99
View details for DOI 10.1029/2017JC013064
View details for Web of Science ID 000440834100015
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Modeling Sedimentation Dynamics of Sediment-Laden River Intrusions in a Rotationally-Influenced, Stratified Lake
WATER RESOURCES RESEARCH
2018; 54 (6): 4084–4107
View details for DOI 10.1029/2017WR021533
View details for Web of Science ID 000440309900018
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Transport Between Palau and the Eastern Coral Triangle: Larval Connectivity or Near Misses
GEOPHYSICAL RESEARCH LETTERS
2018; 45 (10): 4974–81
View details for DOI 10.1029/2018GL077493
View details for Web of Science ID 000435262000049
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Vertically migrating swimmers generate aggregation-scale eddies in a stratified column
NATURE
2018; 556 (7702): 497-+
Abstract
Biologically generated turbulence has been proposed as an important contributor to nutrient transport and ocean mixing1-3. However, to produce non-negligible transport and mixing, such turbulence must produce eddies at scales comparable to the length scales of stratification in the ocean. It has previously been argued that biologically generated turbulence is limited to the scale of the individual animals involved 4 , which would make turbulence created by highly abundant centimetre-scale zooplankton such as krill irrelevant to ocean mixing. Their small size notwithstanding, zooplankton form dense aggregations tens of metres in vertical extent as they undergo diurnal vertical migration over hundreds of metres3,5,6. This behaviour potentially introduces additional length scales-such as the scale of the aggregation-that are of relevance to animal interactions with the surrounding water column. Here we show that the collective vertical migration of centimetre-scale swimmers-as represented by the brine shrimp Artemia salina-generates aggregation-scale eddies that mix a stable density stratification, resulting in an effective turbulent diffusivity up to three orders of magnitude larger than the molecular diffusivity of salt. These observed large-scale mixing eddies are the result of flow in the wakes of the individual organisms coalescing to form a large-scale downward jet during upward swimming, even in the presence of a strong density stratification relative to typical values observed in the ocean. The results illustrate the potential for marine zooplankton to considerably alter the physical and biogeochemical structure of the water column, with potentially widespread effects owing to their high abundance in climatically important regions of the ocean 7 .
View details for PubMedID 29670284
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Local oceanographic variability influences the performance of juvenile abalone under climate change
SCIENTIFIC REPORTS
2018; 8: 5501
Abstract
Climate change is causing warming, deoxygenation, and acidification of the global ocean. However, manifestation of climate change may vary at local scales due to oceanographic conditions. Variation in stressors, such as high temperature and low oxygen, at local scales may lead to variable biological responses and spatial refuges from climate impacts. We conducted outplant experiments at two locations separated by ~2.5 km and two sites at each location separated by ~200 m in the nearshore of Isla Natividad, Mexico to assess how local ocean conditions (warming and hypoxia) may affect juvenile abalone performance. Here, we show that abalone growth and mortality mapped to variability in stress exposure across sites and locations. These insights indicate that management decisions aimed at maintaining and recovering valuable marine species in the face of climate change need to be informed by local variability in environmental conditions.
View details for PubMedID 29615671
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One-Dimensional Particle Tracking with Streamline Preserving Junctions for Flows in Channel Networks
JOURNAL OF HYDRAULIC ENGINEERING
2018; 144 (2)
View details for DOI 10.1061/(ASCE)HY.1943-7900.0001399
View details for Web of Science ID 000418189700007
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"Internal tide pools" prolong kelp forest hypoxic events
LIMNOLOGY AND OCEANOGRAPHY
2017; 62 (6): 2864–78
View details for DOI 10.1002/lno.10716
View details for Web of Science ID 000415930800035
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Gerstner waves in the presence of mean currents and rotation
JOURNAL OF FLUID MECHANICS
2017; 820: 511–28
View details for DOI 10.1017/jfm.2017.223
View details for Web of Science ID 000408177700003
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Effects of current and future coastal upwelling conditions on the fertilization success of the red abalone (Haliotis rufescens)
ICES JOURNAL OF MARINE SCIENCE
2017; 74 (4): 1125–34
View details for DOI 10.1093/icesjms/fsx017
View details for Web of Science ID 000404450100024
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Behavior of a wave-driven buoyant surface jet on a coral reef
JOURNAL OF GEOPHYSICAL RESEARCH-OCEANS
2017; 122 (5): 4088–4109
View details for DOI 10.1002/2016JC011729
View details for Web of Science ID 000404363600032
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A coupled wave-hydrodynamic model of an atoll with high friction: Mechanisms for flow, connectivity, and ecological implications
OCEAN MODELLING
2017; 110: 66-82
View details for DOI 10.1016/j.ocemod.2016.12.012
View details for Web of Science ID 000393722400006
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An integral model of unsteady salinity intrusion in estuaries
JOURNAL OF HYDRAULIC RESEARCH
2017; 55 (3): 392-408
View details for DOI 10.1080/00221686.2016.1274682
View details for Web of Science ID 000400245900008
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Thermodynamics and hydrodynamics in an atoll reef system and their influence on coral cover
LIMNOLOGY AND OCEANOGRAPHY
2016; 61 (6): 2191-2206
View details for DOI 10.1002/lno.10365
View details for Web of Science ID 000387749500017
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Modeling Intrajunction Dispersion at a Well-Mixed Tidal River Junction
JOURNAL OF HYDRAULIC ENGINEERING
2016; 142 (8)
View details for DOI 10.1061/(ASCE)HY.1943-7900.0001108
View details for Web of Science ID 000381055400001
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Observations of nonlinear internal waves at a persistent coastal upwelling front
CONTINENTAL SHELF RESEARCH
2016; 117: 100-117
View details for DOI 10.1016/j.csr.2016.02.007
View details for Web of Science ID 000374607000010
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Wave dynamics of a Pacific Atoll with high frictional effects
JOURNAL OF GEOPHYSICAL RESEARCH-OCEANS
2016; 121 (1): 350-367
View details for DOI 10.1002/2015JC011170
View details for Web of Science ID 000371432200021
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Three-dimensional wave-coupled hydrodynamics modeling in South San Francisco Bay
COMPUTERS & GEOSCIENCES
2015; 85: 10-21
View details for DOI 10.1016/j.cageo.2015.08.010
View details for Web of Science ID 000365051100002
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High-resolution physical and biogeochemical variability from a shallow back reef on Ofu, American Samoa: an end-member perspective
CORAL REEFS
2015; 34 (3): 979-991
View details for DOI 10.1007/s00338-015-1308-9
View details for Web of Science ID 000359161500029
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Observations of vertical eddy diffusivities in a shallow tropical reservoir
JOURNAL OF HYDRO-ENVIRONMENT RESEARCH
2015; 9 (3): 441-451
View details for DOI 10.1016/j.jher.2014.09.004
View details for Web of Science ID 000361772900011
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Sediment transport dynamics near a river inflow in a large alpine lake
LIMNOLOGY AND OCEANOGRAPHY
2015; 60 (4): 1195-1211
View details for DOI 10.1002/lno.10089
View details for Web of Science ID 000357894500008
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Frictional wave dissipation on a remarkably rough reef
GEOPHYSICAL RESEARCH LETTERS
2015; 42 (10): 4063-4071
View details for DOI 10.1002/2015GL063804
View details for Web of Science ID 000356631300054
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Heat balances and thermally driven lagoon-ocean exchangeson a tropical coral reef system (Moorea, French Polynesia)
JOURNAL OF GEOPHYSICAL RESEARCH-OCEANS
2015; 120 (2): 1233-1252
View details for DOI 10.1002/2014JC010145
View details for Web of Science ID 000352154800040
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Field observations of wave-driven circulation over spur and groove formations on a coral reef
JOURNAL OF GEOPHYSICAL RESEARCH-OCEANS
2015; 120 (1): 145-160
View details for DOI 10.1002/2014JC010464
View details for Web of Science ID 000349890000010
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Stratified turbulence in the nearshore coastal ocean: Dynamics and evolution in the presence of internal bores
JOURNAL OF GEOPHYSICAL RESEARCH-OCEANS
2014; 119 (12): 8709-8730
View details for DOI 10.1002/2014JC010396
View details for Web of Science ID 000348452800028
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On the use of refractive-index-matched hydrogel for fluid velocity measurement within and around geometrically complex solid obstructions
EXPERIMENTS IN FLUIDS
2014; 55 (12)
View details for DOI 10.1007/s00348-014-1862-x
View details for Web of Science ID 000345331300010
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Diurnal cross-shore thermal exchange on a tropical forereef
JOURNAL OF GEOPHYSICAL RESEARCH-OCEANS
2014; 119 (9): 6101-6120
View details for DOI 10.1002/2013JC009621
View details for Web of Science ID 000343879200029
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Connecting wind-driven upwelling and offshore stratification to nearshore internal bores and oxygen variability
JOURNAL OF GEOPHYSICAL RESEARCH-OCEANS
2014; 119 (6): 3517-3534
View details for DOI 10.1002/2014JC009998
View details for Web of Science ID 000340414800017
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Local shear and mass transfer on individual coral colonies: Computations in unidirectional and wave-driven flows
JOURNAL OF GEOPHYSICAL RESEARCH-OCEANS
2014; 119 (4): 2599-2619
View details for DOI 10.1002/2013JC009751
View details for Web of Science ID 000336213200027
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Scale-Dependent Dispersion within the Stratified Interior on the Shelf of Northern Monterey Bay
JOURNAL OF PHYSICAL OCEANOGRAPHY
2014; 44 (4): 1049-1064
View details for DOI 10.1175/JPO-D-12-0229.1
View details for Web of Science ID 000334128200001
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Flow through a rough, shallow reef
CORAL REEFS
2014; 33 (1): 99-104
View details for DOI 10.1007/s00338-013-1107-0
View details for Web of Science ID 000330965000013
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Fortnightly Tidal Modulations Affect Net Community Production in a Mesotidal Estuary
ESTUARIES AND COASTS
2014; 37 (1): S91-S110
View details for DOI 10.1007/s12237-013-9765-2
View details for Web of Science ID 000339171800008
- Thermal structure and variability of a shallow tropical reservoir Limnol. Oceanog. 2014; 1 (59): 115-128
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Dispersion Mechanisms of a Tidal River Junction in the Sacramento–San Joaquin Delta, California
San Francisco Estaury and Watershed Science
2014
View details for DOI 10.154447/sfews.2014v12iss4art1
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Thermal structure and variability of a shallow tropical reservoir
LIMNOLOGY AND OCEANOGRAPHY
2014; 59 (1): 115-128
View details for DOI 10.4319/lo.2014.59.01.0115
View details for Web of Science ID 000339901800010
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Using Depth-Normalized Coordinates to Examine Mass Transport Residual Circulation in Estuaries with Large Tidal Amplitude Relative to the Mean Depth
JOURNAL OF PHYSICAL OCEANOGRAPHY
2014; 44 (1): 128-148
View details for DOI 10.1175/JPO-D-12-0201.1
View details for Web of Science ID 000335802100015
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Scale-Dependent Dispersion within the Stratified Interior on the Shelf of Northern Monterey Bay
Journal of Physical Oceanography
2014; 44: 1049-1065=4
View details for DOI 10.1175/JPO-D-12-0229.1
- Using depth-normalized coordinates to examine mass transport residual circulation in estuaries with large tidal amplitude relative to the mean depth J. Phys. Ocean. 2014; 44: 128–148
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Simple Estimate of Entrainment Rate of Pollutants from a Coastal Discharge into the Surf Zone (vol 47, pg 11554, 2013)
ENVIRONMENTAL SCIENCE & TECHNOLOGY
2013; 47 (22): 13208
View details for DOI 10.1021/es4048736
View details for Web of Science ID 000327360600077
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Simple estimate of entrainment rate of pollutants from a coastal discharge into the surf zone.
Environmental science & technology
2013; 47 (20): 11554-11561
Abstract
Microbial pollutants from coastal discharges can increase illness risks for swimmers and cause beach advisories. There is presently no predictive model for estimating the entrainment of pollution from coastal discharges into the surf zone. We present a novel, quantitative framework for estimating surf zone entrainment of pollution at a wave-dominant open beach. Using physical arguments, we identify a dimensionless parameter equal to the quotient of the surf zone width l(sz) and the cross-flow length scale of the discharge la = M(j) (1/2)/U(sz), where M(j) is the discharge's momentum flux and U(sz) is a representative alongshore velocity in the surf zone. We conducted numerical modeling of a nonbuoyant discharge at an alongshore uniform beach with constant slope using a wave-resolving hydrodynamic model. Using results from 144 numerical experiments we develop an empirical relationship between the surf zone entrainment rate α and l(sz)/(la). The empirical relationship can reasonably explain seven measurements of surf zone entrainment at three diverse coastal discharges. This predictive relationship can be a useful tool in coastal water quality management and can be used to develop predictive beach water quality models.
View details for DOI 10.1021/es402492f
View details for PubMedID 24006887
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Temporal and spatial variability of the internal wave field in a lake with complex morphometry
LIMNOLOGY AND OCEANOGRAPHY
2013; 58 (5): 1557-1580
View details for DOI 10.4319/lo.2013.58.5.1557
View details for Web of Science ID 000327393800003
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Local mass transfer measurements for corals and other complex geometries using gypsum dissolution
EXPERIMENTS IN FLUIDS
2013; 54 (7)
View details for DOI 10.1007/s00348-013-1563-x
View details for Web of Science ID 000322186200016
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Wave Transformation and Wave-Driven Flow across a Steep Coral Reef
JOURNAL OF PHYSICAL OCEANOGRAPHY
2013; 43 (7): 1356-1379
View details for DOI 10.1175/JPO-D-12-0164.1
View details for Web of Science ID 000329778000008
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Hydrodynamics of spur and groove formations on a coral reef
JOURNAL OF GEOPHYSICAL RESEARCH-OCEANS
2013; 118 (6): 3059-3073
View details for DOI 10.1002/jgrc.20225
View details for Web of Science ID 000324885500021
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Interaction of waves and currents with kelp forests (Macrocystis pyrifera): Insights from a dynamically scaled laboratory model
LIMNOLOGY AND OCEANOGRAPHY
2013; 58 (3): 790-802
View details for DOI 10.4319/lo.2013.58.3.0790
View details for Web of Science ID 000322491100003
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Contrasting Seasonal and Fortnightly Variations in the Circulation of a Seasonally Inverse Estuary, Elkhorn Slough, California
ESTUARIES AND COASTS
2013; 36 (1): 1-17
View details for DOI 10.1007/s12237-012-9548-1
View details for Web of Science ID 000312717400001
- Interactions between a kelp forest (Macrocystis pyrifera) and waves: Insights from a dynamically scaled laboratory model Limnol. Ocean. 2013; 3 (58): 790–802
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Wave transformation and wave-driven flow across a steep coral reef.
Journal of Physical Oceanography
2013; 43: 1356–1379
View details for DOI 10.1175/JPO-D-12-0164.1
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Drag coefficients for single coral colonies and related spherical objects
Limnology and Oceanography Fluids and Environments
2013; 3: 173-181
View details for DOI 10.1215/21573689-2378401
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Flow through a rough, shallow reef
Coral Reefs
2013
View details for DOI 10.1007/s00338-013-1107-0
- A simple estimate of entrainment rate of pollutants from a coastal discharge into the surf zone Env. Sci. Tech. 2013; 47: 11554-11561
- Temporal and spatial variability of the internal wave field in a lake with complex morphometry Limnol. Ocean. 2013; 5 (58): 1557–1580
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Characteristics of Monochromatic Waves Breaking over Fringing Reefs
JOURNAL OF COASTAL RESEARCH
2013; 29 (1): 94-104
View details for DOI 10.2112/JCOASTRES-D-12-00021.1
View details for Web of Science ID 000313930200010
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Comparison of mixing efficiency and vertical diffusivity models from temperature microstructure
JOURNAL OF GEOPHYSICAL RESEARCH-OCEANS
2012; 117
View details for DOI 10.1029/2012JC007967
View details for Web of Science ID 000309614300001
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Observations of tidal currents in the northern Gulf of Eilat/Aqaba (Red Sea)
JOURNAL OF MARINE SYSTEMS
2012; 102: 14-28
View details for DOI 10.1016/j.jmarsys.2012.04.008
View details for Web of Science ID 000305866200002
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Nearshore internal bores and turbulent mixing in southern Monterey Bay
JOURNAL OF GEOPHYSICAL RESEARCH-OCEANS
2012; 117
View details for DOI 10.1029/2012JC008115
View details for Web of Science ID 000306909800002
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Water and heat budgets of a shallow tropical reservoir
WATER RESOURCES RESEARCH
2012; 48
View details for DOI 10.1029/2011WR011314
View details for Web of Science ID 000306000600003
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1DH Boussinesq modeling of wave transformation over fringing reefs
OCEAN ENGINEERING
2012; 47: 30-42
View details for DOI 10.1016/j.oceaneng.2012.03.010
View details for Web of Science ID 000304746800004
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A short-term in situ CO2 enrichment experiment on Heron Island (GBR)
SCIENTIFIC REPORTS
2012; 2
Abstract
Ocean acidification poses multiple challenges for coral reefs on molecular to ecological scales, yet previous experimental studies of the impact of projected CO₂ concentrations have mostly been done in aquarium systems with corals removed from their natural ecosystem and placed under artificial light and seawater conditions. The Coral-Proto Free Ocean Carbon Enrichment System (CP-FOCE) uses a network of sensors to monitor conditions within each flume and maintain experimental pH as an offset from environmental pH using feedback control on the injection of low pH seawater. Carbonate chemistry conditions maintained in the -0.06 and -0.22 pH offset treatments were significantly different than environmental conditions. The results from this short-term experiment suggest that the CP-FOCE is an important new experimental system to study in situ impacts of ocean acidification on coral reef ecosystems.
View details for DOI 10.1038/srep00413
View details for Web of Science ID 000304394000002
View details for PubMedID 22639723
View details for PubMedCentralID PMC3356889
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Frontogenesis and Frontal Progression of a Trapping-Generated Estuarine Convergence Front and Its Influence on Mixing and Stratification
ESTUARIES AND COASTS
2012; 35 (2): 665-681
View details for DOI 10.1007/s12237-011-9453-z
View details for Web of Science ID 000300771900023
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WAVE SETUP OVER FRINGING REEF WITH A SHALLOW REEF CREST: A HYDRAULIC THEORY FOR FLOWS UNDER CRITICAL CONDITIONS
6th International Conference on Asian and Pacific Coasts (APAC)
WORLD SCIENTIFIC PUBL CO PTE LTD. 2012
View details for Web of Science ID 000311609100214
- Internal bore-like features and turbulent mixing on the inner shelf of southern Monterey Bay J. Geophys. Res. (Oceans) 2012; C07017 (117): 13
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Horizontal dispersion of ocean tracers in internal wave shear
JOURNAL OF GEOPHYSICAL RESEARCH-OCEANS
2011; 116
View details for DOI 10.1029/2011JC007213
View details for Web of Science ID 000297271900003
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The Modification of Bottom Boundary Layer Turbulence and Mixing by Internal Waves Shoaling on a Barrier Reef
JOURNAL OF PHYSICAL OCEANOGRAPHY
2011; 41 (11): 2223-2241
View details for DOI 10.1175/2011JPO4344.1
View details for Web of Science ID 000298020600012
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Similarity scaling of turbulence spectra and cospectra in a shallow tidal flow
JOURNAL OF GEOPHYSICAL RESEARCH-OCEANS
2011; 116
View details for DOI 10.1029/2011JC007144
View details for Web of Science ID 000295987800007
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Role of straining and advection in the intratidal evolution of stratification, vertical mixing, and longitudinal dispersion of a shallow, macrotidal, salt wedge estuary
JOURNAL OF GEOPHYSICAL RESEARCH-OCEANS
2011; 116
View details for DOI 10.1029/2010JC006482
View details for Web of Science ID 000288089400001
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Short-term coherency between gross primary production and community respiration in an algal-dominated reef flat
CORAL REEFS
2011; 30 (1): 53-58
View details for DOI 10.1007/s00338-010-0671-9
View details for Web of Science ID 000286940800006
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Modeling and understanding turbulent mixing in a macrotidal salt wedge estuary
JOURNAL OF GEOPHYSICAL RESEARCH-OCEANS
2011; 116
View details for DOI 10.1029/2010JC006135
View details for Web of Science ID 000287810400001
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The Tidally Averaged Momentum Balance in a Partially and Periodically Stratified Estuary
JOURNAL OF PHYSICAL OCEANOGRAPHY
2010; 40 (11): 2418-2434
View details for DOI 10.1175/2010JPO4389.1
View details for Web of Science ID 000284972900004
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Flow effects on benthic grazing on phytoplankton by a Caribbean reef
LIMNOLOGY AND OCEANOGRAPHY
2010; 55 (5): 1881-1892
View details for DOI 10.4319/lo.2010.55.5.1881
View details for Web of Science ID 000283667100007
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An Autonomous Open-Ocean Stereoscopic PIV Profiler
JOURNAL OF ATMOSPHERIC AND OCEANIC TECHNOLOGY
2010; 27 (8): 1362-1380
View details for DOI 10.1175/2010JTECHO694.1
View details for Web of Science ID 000281160600008
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Modelling Stratification and Baroclinic Flow in the Estuarine Transition Zone of the St. Lawrence Estuary
ATMOSPHERE-OCEAN
2010; 48 (2): 132-146
View details for DOI 10.3137/OC316.2010
View details for Web of Science ID 000279579600005
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Currents and turbulence within a kelp forest (Macrocystis pyrifera): Insights from a dynamically scaled laboratory model
LIMNOLOGY AND OCEANOGRAPHY
2010; 55 (3): 1145-1158
View details for DOI 10.4319/lo.2010.55.3.1145
View details for Web of Science ID 000277650900016
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Turbulent mixing in fine-scale phytoplankton layers: Observations and inferences of layer dynamics
CONTINENTAL SHELF RESEARCH
2010; 30 (5): 442-455
View details for DOI 10.1016/j.csr.2009.12.014
View details for Web of Science ID 000276547000005
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WAVE-INDUCED SET-UP OVER FRINGING CORAL REEFS: A COMPARISON BETWEEN SMOOTH AND POROUS REEF FLATS
5th International Conference on Asian and Pacific Coasts
WORLD SCIENTIFIC PUBL CO PTE LTD. 2010: 236–244
View details for Web of Science ID 000275693800034
- Modeling stratification and baroclinic flow in the estuarine transition zone of the St. Lawrence Estuary Atmosphere-Ocean 2010; 2 (48): 132-146
- An Autonomous Open-Ocean Particle Imaging Profiler. Part I: In-situ Stereoscopic PIV from a Free-falling Oceanic Profiler J. Atmos Ocean Tech. 2010; 8 (27): 1362–1380
- Dynamics of phytoplankton layers: Persistence and breakdown at the base of the mixed layer Cont. Shelf Res. 2010; 5 (30): 442-455
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Remotely sensed river surface features compared with modeling and in situ measurements
JOURNAL OF GEOPHYSICAL RESEARCH-OCEANS
2009; 114
View details for DOI 10.1029/2009JC005440
View details for Web of Science ID 000271581400004
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Tidally regulated chemical fluxes across the sediment-water interface in Elkhorn Slough, California: Evidence from a coupled geochemical and hydrodynamic approach
LIMNOLOGY AND OCEANOGRAPHY
2009; 54 (6): 1964-1980
View details for Web of Science ID 000270390200013
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An Evaluation of chi(T) Estimation Techniques: Implications for Batchelor Fitting and epsilon
JOURNAL OF ATMOSPHERIC AND OCEANIC TECHNOLOGY
2009; 26 (8): 1652-1662
View details for DOI 10.1175/2009JTECHO611.1
View details for Web of Science ID 000268801300015
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Evidence for Submesoscale Barriers to Horizontal Mixing in the Ocean from Current Measurements and Aerial Photographs
JOURNAL OF PHYSICAL OCEANOGRAPHY
2009; 39 (8): 1975-1983
View details for DOI 10.1175/2009JPO4116.1
View details for Web of Science ID 000269263100014
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A numerical study of circulation in a coastal reef-lagoon system
JOURNAL OF GEOPHYSICAL RESEARCH-OCEANS
2009; 114
View details for DOI 10.1029/2008JC005081
View details for Web of Science ID 000267490700002
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Intense benthic grazing of phytoplankton in a coral reef
LIMNOLOGY AND OCEANOGRAPHY
2009; 54 (3): 938-951
View details for Web of Science ID 000268325000026
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Hydrodynamic control of phytoplankton loss to the benthos in an estuarine environment
LIMNOLOGY AND OCEANOGRAPHY
2009; 54 (3): 952-969
View details for Web of Science ID 000268325000027
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Lateral Circulation in Well-Mixed and Stratified Estuarine Flows with Curvature
JOURNAL OF PHYSICAL OCEANOGRAPHY
2009; 39 (4): 831-851
View details for DOI 10.1175/2008JPO4017.1
View details for Web of Science ID 000265639700002
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Wave-Driven Circulation of a Coastal Reef-Lagoon System
JOURNAL OF PHYSICAL OCEANOGRAPHY
2009; 39 (4): 873-893
View details for DOI 10.1175/2008JPO3958.1
View details for Web of Science ID 000265639700004
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Turbulent Stresses and Secondary Currents in a Tidal-Forced Channel with Significant Curvature and Asymmetric Bed Forms
JOURNAL OF HYDRAULIC ENGINEERING-ASCE
2009; 135 (3): 198-208
View details for DOI 10.1061/(ASCE)0733-9429(2009)135:3(198)
View details for Web of Science ID 000263403000005
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Shallow water processes govern system-wide phytoplankton bloom dynamics: A modeling study
JOURNAL OF MARINE SYSTEMS
2009; 75 (1-2): 70-86
View details for DOI 10.1016/j.jmarsys.2008.07.011
View details for Web of Science ID 000262750800006
- The surface mixed layer in lakes Encyclopedia of Inland Waters. Oxford: Elsevier. 2009: 636–650
- Flow inside a coral colony measured using Magnetic Resonance Velocimetry Limnol. Oceanog. 2009; 5 (54): 1819–1827
- Tidally driven chemical fluxes across the sediment-water interface at Elkhorn Slough, California: evidence from a coupled geochemical and hydrodynamic approach Limnol. Oceanog. 2009; 6 (54): 1964 -1980
- Techniques for the accurate estimation of χT and ε from temperature microstructure J. Atmos Ocean Tech. 2009; 8 (26): 1652-1662
- Observations of secondary circulation and bottom stress in a channel with significant curvatures J. ASCE Hyd. Div. 2009; 3 (135): 198-208
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Thermal Variability in a Tidal River
ESTUARIES AND COASTS
2009; 32 (1): 100-110
View details for DOI 10.1007/s12237-008-9109-9
View details for Web of Science ID 000262504600008
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An Experimental Study of Wave-Induced Set-up over a Horizontal Reef with an Idealized Ridge
28th International Conference on Ocean, Offshore and Arctic Engineering (OMAE)
AMER SOC MECHANICAL ENGINEERS. 2009: 383–389
View details for Web of Science ID 000283008400041
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Modeling flow in coral communities with and without waves: A synthesis of porous media and canopy flow approaches
LIMNOLOGY AND OCEANOGRAPHY
2008; 53 (6): 2668-2680
View details for Web of Science ID 000261355500028
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Evidence for the inherent unsteadiness of a river plume: Satellite observations of the Niagara River discharge
LIMNOLOGY AND OCEANOGRAPHY
2008; 53 (6): 2731-2737
View details for Web of Science ID 000261355500034
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Episodic circulation and exchange in a wave-driven coral reef and lagoon system
LIMNOLOGY AND OCEANOGRAPHY
2008; 53 (6): 2681-2694
View details for Web of Science ID 000261355500029
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Shallow water processes govern system-wide phytoplankton bloom dynamics: A field study
JOURNAL OF MARINE SYSTEMS
2008; 74 (1-2): 153-166
View details for DOI 10.1016/j.jmarsys.2007.12.006
View details for Web of Science ID 000261256100009
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Effects of western boundary current dynamics on the internal wave field of the Southeast Florida shelf
JOURNAL OF GEOPHYSICAL RESEARCH-OCEANS
2008; 113 (C9)
View details for DOI 10.1029/2007JC004699
View details for Web of Science ID 000259001900006
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Plume dispersion on a fringing coral reef system
LIMNOLOGY AND OCEANOGRAPHY
2008; 53 (5): 2273-2286
View details for Web of Science ID 000261355400017
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Continuous measurements of net production over a shallow reef community using a modified Eulerian approach
JOURNAL OF GEOPHYSICAL RESEARCH-OCEANS
2008; 113 (C7)
View details for DOI 10.1029/2007JC004663
View details for Web of Science ID 000257999900005
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The influence of whitecapping waves on the vertical structure of turbulence in a shallow estuarine embayment
JOURNAL OF PHYSICAL OCEANOGRAPHY
2008; 38 (7): 1563-1580
View details for DOI 10.1175/2007JPO3766.1
View details for Web of Science ID 000257853500012
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Modeling the influence of wave-enhanced turbulence in a shallow tide- and wind-driven water column
JOURNAL OF GEOPHYSICAL RESEARCH-OCEANS
2008; 113 (C3)
View details for DOI 10.1029/2007JC004246
View details for Web of Science ID 000254167300005
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Extracting Reynolds stresses from acoustic Doppler current profiler measurements in wave-dominated environments
JOURNAL OF ATMOSPHERIC AND OCEANIC TECHNOLOGY
2008; 25 (2): 286-306
View details for DOI 10.1175/2007JTECH0525.1
View details for Web of Science ID 000253582700010
- Episodic circulation and exchange in a wave driven coral reef lagoon system Limnol. Oceang. 2008; 6 (53): 2681-2694
- The potential influence of whitecapping waves on vertical mixing in Franks Tract”, San Francisco Bay, California, USA San Francisco Estuary and Watershed Science 2008; 2 (6)
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Measuring short-period wind waves in a tidally forced environment with a subsurface pressure gauge
LIMNOLOGY AND OCEANOGRAPHY-METHODS
2007; 5: 317-327
View details for Web of Science ID 000251564500003
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Spatial patterns of flow and their modification within and around a giant kelp forest
LIMNOLOGY AND OCEANOGRAPHY
2007; 52 (5): 1838-1852
View details for Web of Science ID 000249416200009
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Observing Larval Transport Processes Affecting Population Connectivity Progress and Challenges
OCEANOGRAPHY
2007; 20 (3): 40-53
View details for Web of Science ID 000261638200009
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Spectral wave-turbulence decomposition
JOURNAL OF ATMOSPHERIC AND OCEANIC TECHNOLOGY
2007; 24 (8): 1479-1487
View details for DOI 10.1175/JTECH2066.1
View details for Web of Science ID 000249099900012
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Laboratory experiments of fine-scale mixing and mass transport within a coral canopy
PHYSICS OF FLUIDS
2007; 19 (7)
View details for DOI 10.1063/1.2752189
View details for Web of Science ID 000248486100037
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Spectral wave flow attenuation within submerged canopies: Implications for wave energy dissipation
JOURNAL OF GEOPHYSICAL RESEARCH-OCEANS
2007; 112 (C5)
View details for DOI 10.1029/2006JC003605
View details for Web of Science ID 000246497200002
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Laboratory observations of mean flows under surface gravity waves
JOURNAL OF FLUID MECHANICS
2007; 573: 131-147
View details for DOI 10.1017/S0022112006003594
View details for Web of Science ID 000244635500006
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A field investigation into the effects of a kelp forest (Macrocystis pyrifera) on coastal hydrodynamics and transport
JOURNAL OF GEOPHYSICAL RESEARCH-OCEANS
2007; 112 (C2)
View details for DOI 10.1029/2005JC003430
View details for Web of Science ID 000244369900001
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Structure of mass and momentum fields over a model aggregation of benthic filter feeders
BIOGEOSCIENCES
2007; 4 (3): 269-282
View details for Web of Science ID 000247572200002
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Hydrodynamics of coral reefs
ANNUAL REVIEW OF FLUID MECHANICS
2007; 39: 37-55
View details for DOI 10.1146/annurev.fluid.38.050304.092125
View details for Web of Science ID 000243900500004
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Effects of nonlocal turbulence on the mass transfer of dissolved species to reef corals
LIMNOLOGY AND OCEANOGRAPHY
2007; 52 (1): 274-285
View details for Web of Science ID 000243795400025
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The effects of coral morphology and ambient flow on mass transfer in coral communities
OXFORD UNIV PRESS INC. 2006: E115–E115
View details for Web of Science ID 000202970100459
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Zooplankton retention in the estuarine transition zone of the St. Lawrence Estuary
LIMNOLOGY AND OCEANOGRAPHY
2006; 51 (6): 2621-2631
View details for Web of Science ID 000242265700011
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A mixing-length formulation for the turbulent Prandtl number in wall-bounded flows with bed roughness and elevated scalar sources
PHYSICS OF FLUIDS
2006; 18 (9)
View details for DOI 10.1063/1.2227005
View details for Web of Science ID 000240877600019
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Boundary layer turbulence and flow structure over a fringing coral reef
LIMNOLOGY AND OCEANOGRAPHY
2006; 51 (5): 1956-1968
View details for Web of Science ID 000240673800002
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Thermally driven exchanges between a coral reef and the adjoining ocean
JOURNAL OF PHYSICAL OCEANOGRAPHY
2006; 36 (7): 1332-1347
View details for Web of Science ID 000239979600006
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The importance of submarine groundwater discharge to the nearshore nutrient supply in the Gulf of Aqaba (Israel)
LIMNOLOGY AND OCEANOGRAPHY
2006; 51 (4): 1876-1886
View details for Web of Science ID 000239262200030
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Laboratory experiments simulating a coastal river inflow
JOURNAL OF FLUID MECHANICS
2006; 555: 203-232
View details for DOI 10.1017/S0022112006008937
View details for Web of Science ID 000238236200010
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Effects of the depth to coral height ratio on drag coefficients for unidirectional flow over coral
LIMNOLOGY AND OCEANOGRAPHY
2006; 51 (3): 1294-1301
View details for Web of Science ID 000237748300008
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A novel flume for simulating the effects of wave- and tide-driven water motion on the biogeochemistry of benthic reef communities
LIMNOLOGY AND OCEANOGRAPHY-METHODS
2006; 4: 68-79
View details for Web of Science ID 000238436700001
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The effects of waves and morphology on mass transfer within branched reef corals
LIMNOLOGY AND OCEANOGRAPHY
2006; 51 (2): 1134-1141
View details for Web of Science ID 000236343600033
- A new mesocosm for simulating the effects of wave-driven water motion on the biogeochemistry of benthic reef communities. Limnol. Oceanogr. Methods 2006; 4: 68-79
- Effects of waves, unidirectional currents, and morphology on mass transfer in branched reef corals Limnol. Oceanog 2006; 2 (51): 1134-1141
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Oscillatory flow through submerged canopies: 1. Velocity structure
JOURNAL OF GEOPHYSICAL RESEARCH-OCEANS
2005; 110 (C10)
View details for DOI 10.1029/2004JC002788
View details for Web of Science ID 000232688400002
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Oscillatory flow through submerged canopies: 2. Canopy mass transfer
JOURNAL OF GEOPHYSICAL RESEARCH-OCEANS
2005; 110 (C10)
View details for DOI 10.1029/2004JC002789
View details for Web of Science ID 000232688400003
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Bed drag coefficient variability under wind waves in a tidal estuary
JOURNAL OF HYDRAULIC ENGINEERING-ASCE
2005; 131 (6): 497-508
View details for DOI 10.1061/(ASCE)0733-9429(2005)131:6(497)
View details for Web of Science ID 000229223200007
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Spectral wave dissipation over a barrier reef
JOURNAL OF GEOPHYSICAL RESEARCH-OCEANS
2005; 110 (C4)
View details for DOI 10.1029/2004JC002711
View details for Web of Science ID 000228379100001
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Near-bottom depletion of zooplankton over a coral reef - II: relationships with zooplankton swimming ability
CORAL REEFS
2005; 24 (1): 87-94
View details for DOI 10.1007/s00338-004-0450-6
View details for Web of Science ID 000227742400014
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On the effects of topography on wind and the generation of currents in a large multi-basin lake
HYDROBIOLOGIA
2005; 532: 139-151
View details for Web of Science ID 000226928800013
- Near-bottom depletion of zooplankton over a coral reef: bottom avoidance or actual predation? Coral Reefs 2005; 24: 87-94
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A note on the potential transport of scalars and organisms by surface waves
LIMNOLOGY AND OCEANOGRAPHY
2004; 49 (4): 1214-1217
View details for Web of Science ID 000224979700033
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Evaluation of the accuracy of a ship-mounted, bottom-tracking ADCP in a near-shore coastal flow
JOURNAL OF ATMOSPHERIC AND OCEANIC TECHNOLOGY
2004; 21 (7): 1121-1128
View details for Web of Science ID 000222458300014
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Double diffusive effect on desalination discharges
JOURNAL OF HYDRAULIC ENGINEERING-ASCE
2004; 130 (5): 450-457
View details for DOI 10.1061/(ASCE)0733-9429(2004)130:5(450)
View details for Web of Science ID 000220980100008
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Tides and sea level in the Gulf of Aqaba (Eilat)
JOURNAL OF GEOPHYSICAL RESEARCH-OCEANS
2004; 109 (C4)
View details for DOI 10.1029/2003JC002069
View details for Web of Science ID 000221086600001
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Covariation of coastal water temperature and microbial pollution at interannual to tidal periods
GEOPHYSICAL RESEARCH LETTERS
2004; 31 (6)
View details for DOI 10.1029/2003GL019122
View details for Web of Science ID 000220743300005
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Modelling the effects of bed drag coefficient variability under wind waves in South San Francisco Bay
8th International Conference on Estuarine and Coastal Modeling
AMER SOC CIVIL ENGINEERS. 2004: 89–107
View details for Web of Science ID 000228129600007
- Bed Drag Coefficient Variability in a Tidal Estuary: Field measurements and Numerical Modeling Annual Journal of Hydraulic Engineering, JSCE 2004; 48: 1237-1242
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The interplay between upwelling and deep convective mixing in determining the seasonal phytoplankton dynamics in the Gulf of Aqaba: Evidence from SeaWiFS and MODIS
LIMNOLOGY AND OCEANOGRAPHY
2003; 48 (6): 2355-2368
View details for Web of Science ID 000186772800029
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Interaction of lateral baroclinic forcing and turbulence in an estuary
JOURNAL OF GEOPHYSICAL RESEARCH-OCEANS
2003; 108 (C3)
View details for DOI 10.1029/2002JC001392
View details for Web of Science ID 000182224300005
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Dynamics of large polymictic lake. I: Field observations
JOURNAL OF HYDRAULIC ENGINEERING-ASCE
2003; 129 (2): 82-91
View details for DOI 10.1061/(ASCE)0733-9429(2003)129:2(82)
View details for Web of Science ID 000180481000001
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The interaction of lateral baroclinic forcing and turbulence in an estuary.
J. Geophys. Res (Oceans)
2003; C3 (108)
View details for DOI 10.1029/2001JC001105
- The internal dynamics of a large polymictic lake. Part I: Field observations. J. Hydraulic Eng. 2003; 2 (129): 82-91
- The interplay between upwelling and deep convective mixing in determining the seasonal phytoplankton dynamics in the Gulf of Aqaba: Evidence from SeaWiFS and MODIS. Limnol. Ocean. 2003; 6 (48): 2355-2368
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Structure and flow-induced variability of the subtidal salinity field in northern San Francisco Bay
JOURNAL OF PHYSICAL OCEANOGRAPHY
2002; 32 (11): 3003-3019
View details for Web of Science ID 000178834000003
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A comment on the use of flushing time, residence time, and age as transport time scales
LIMNOLOGY AND OCEANOGRAPHY
2002; 47 (5): 1545-1553
View details for Web of Science ID 000178081800028
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Numerical simulation of geophysical turbulence
COMPUTERS & FLUIDS
2002; 31 (4-7): 557-568
View details for Web of Science ID 000174525900012
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Tidal asymmetry and variability of bed shear stress and sediment bed flux at a site in San Francisco Bay, USA
6th International Conference on Cohesive Sediment Transport (INTERCOH 2000)
ELSEVIER SCIENCE BV. 2002: 93–107
View details for Web of Science ID 000177780800007
- Tidal asymmetry and variability of cohesive sediment transport at a site in San Francisco Bay, California edited by Winterwerp, J., C., Kranenburg, C. 2002
- Intense benthic grazing on phytoplankton in coral reefs revealed using the control volume approach Oceanography 2002; 2 (15): 90-97
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Secondary currents in a curved, stratified, estuarine channel
JOURNAL OF GEOPHYSICAL RESEARCH-OCEANS
2001; 106 (C12): 31283-31302
View details for Web of Science ID 000173402400026
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Creation of residual flows in a partially stratified estuary
JOURNAL OF GEOPHYSICAL RESEARCH-OCEANS
2001; 106 (C8): 17013-17037
View details for Web of Science ID 000170326000028
- Creation of residual flows in a partially stratified estuary J. Geophys. Res (Oceans) 2001; C4 (106): 17013-17038
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Stably stratified turbulent channel flows. I. Stratification regimes and turbulence suppression mechanism
PHYSICS OF FLUIDS
2000; 12 (10): 2569-2594
View details for Web of Science ID 000089171000019
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Evaluation of advection schemes for estuary transport - Closure
JOURNAL OF HYDRAULIC ENGINEERING-ASCE
2000; 126 (4): 314-316
View details for Web of Science ID 000086104900012
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Plume dispersion in a stratified, near-coastal flow: measurements and modeling
CONTINENTAL SHELF RESEARCH
2000; 20 (6): 637-663
View details for Web of Science ID 000086308000001
- Stably stratified channel flows. I Stratification regimes and turbulence suppression mechanism Phys. Fluids. 2000; 10 (12): 2569-2594
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Three-dimensional salinity simulations of south San Francisco Bay
JOURNAL OF HYDRAULIC ENGINEERING-ASCE
1999; 125 (11): 1199-1209
View details for Web of Science ID 000083311900010
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Observations of turbulence in a partially stratified estuary
JOURNAL OF PHYSICAL OCEANOGRAPHY
1999; 29 (8): 1950-1970
View details for Web of Science ID 000082607500005
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Measurements of Reynolds stress profiles in unstratified tidal flow
JOURNAL OF GEOPHYSICAL RESEARCH-OCEANS
1999; 104 (C5): 10933-10949
View details for Web of Science ID 000080448200003
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Evaluation of advective schemes for estuarine salinity simulations
JOURNAL OF HYDRAULIC ENGINEERING-ASCE
1999; 125 (1): 32-46
View details for Web of Science ID 000077467800006
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Processes governing phytoplankton blooms in estuaries. II: The role of horizontal transport
MARINE ECOLOGY PROGRESS SERIES
1999; 187: 17-30
View details for Web of Science ID 000083830200002
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Salinity simulations in San Francisco Bay
2nd International Symposium on Environmental Hydraulics
A A BALKEMA PUBLISHERS. 1999: 67–73
View details for Web of Science ID 000078240600009
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Processes governing phytoplankton blooms in estuaries. I: The local production-loss balance
MARINE ECOLOGY PROGRESS SERIES
1999; 187: 1-15
View details for Web of Science ID 000083830200001
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Does the Sverdrup critical depth model explain bloom dynamics in estuaries?
JOURNAL OF MARINE RESEARCH
1998; 56 (2): 375-415
View details for Web of Science ID 000073642800004
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Turbulent mixing in a shear-free stably stratified two-layer fluid
JOURNAL OF FLUID MECHANICS
1998; 354: 175-208
View details for Web of Science ID 000071873700007
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Direct numerical simulation of wave-mean flow and wave-wave interactions: A brief perspective
Symposium on Physical Limnology
AMER GEOPHYSICAL UNION. 1998: 271–283
View details for Web of Science ID 000079137400020
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On wavy mean flows, Langmuir cells, strain, and turbulence
Symposium on Physical Limnology
AMER GEOPHYSICAL UNION. 1998: 101–110
View details for Web of Science ID 000079137400007
- On wavy mean flows, strain, turbulence and Langmuir cells IUTAM Symposium on Physical Limnology American Geophysical Union. 1998: 101–110
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Hybrid spectral finite difference simulations of stratified turbulent flows on distributed memory architectures
INTERNATIONAL JOURNAL FOR NUMERICAL METHODS IN FLUIDS
1997; 24 (11): 1129-1158
View details for Web of Science ID A1997XB30300004
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Digital particle tracking velocimetry
27th Congress of the International-Association-for-Hydraulic-Research
AMER SOC CIVIL ENGINEERS. 1997: 119–124
View details for Web of Science ID 000081412000021
- Entrainment in a shear-free, stably stratified turbulent mixing layer J. Fluid Mech. 1997; 354: 175-208
- An hybrid digital particle tracking velocimetry technique Experiments in Fluids 1997; 22: 199-211
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A hybrid digital particle tracking velocimetry technique
EXPERIMENTS IN FLUIDS
1997; 22 (3): 199-211
View details for Web of Science ID A1997WE81600003
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Measuring estuarine turbulence with an ADCP
27th Congress of the International-Association-for-Hydraulic-Research
AMER SOC CIVIL ENGINEERS. 1997: 155–160
View details for Web of Science ID 000081412000027
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Stratification and turbulence over a tidal cycle in northern San Francisco Bay
27th Congress of the International-Association-for-Hydraulic-Research
AMER SOC CIVIL ENGINEERS. 1997: 1108–1113
View details for Web of Science ID 000081412000187
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Observations of turbulent mixing and shear in a partially stratified estuary
27th Congress of the International-Association-for-Hydraulic-Research
AMER SOC CIVIL ENGINEERS. 1997: 1102–1107
View details for Web of Science ID 000081412000186
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A simple model of mixing in stratified tidal flows
JOURNAL OF GEOPHYSICAL RESEARCH-OCEANS
1996; 101 (C12): 28583-28595
View details for Web of Science ID A1996VY90200019
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Environmental hydraulics: New research directions for the 21st century
JOURNAL OF HYDRAULIC ENGINEERING-ASCE
1996; 122 (4): 180-183
View details for Web of Science ID A1996UC58300001
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Entrainment in a shear-free turbulent mixing layer
JOURNAL OF FLUID MECHANICS
1996; 310: 215-241
View details for Web of Science ID A1996UB75400008
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The effects of near-bed hydrodynamics on model bivalve filtration rates
International Symposium on Suspended Particulate Matter in Rivers and Estuaries
E SCHWEIZERBART'SCHE VERLAGSBUCHHANDLUNG. 1996: 247–254
View details for Web of Science ID A1996BH14Q00023
- Stratification Dynamics and Gravitational Circulation in Northern San Francisco Bay AAAS. 1996: 123–153
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Simulation of stratified turbulent channel flows on the intel paragon parallel supercomputer
Parallel CFD 1995 Conference - Implementations and Results Using Parallel Computers
ELSEVIER SCIENCE PUBL B V. 1996: 481–488
View details for Web of Science ID A1996BG02Z00059
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LONGITUDINAL VORTICES BENEATH BREAKING WAVES
JOURNAL OF GEOPHYSICAL RESEARCH-OCEANS
1995; 100 (C8): 16211-16221
View details for Web of Science ID A1995RP99900029
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THE EFFECT OF BIVALVE EXCURRENT JET DYNAMICS ON MASS-TRANSFER IN A BENTHIC BOUNDARY-LAYER
LIMNOLOGY AND OCEANOGRAPHY
1995; 40 (2): 330-344
View details for Web of Science ID A1995QZ60800013
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ISOHALINE POSITION AS A HABITAT INDICATOR FOR ESTUARINE POPULATIONS
ECOLOGICAL APPLICATIONS
1995; 5 (1): 272-289
View details for Web of Science ID A1995QK27600027
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IMPLEMENTATION OF SPECTRAL FINITE DIFFERENCE METHOD FOR SIMULATION OF STRATIFIED TURBULENT FLOWS ON DISTRIBUTED MEMORY MULTIPROCESSORS
7th SIAM Conference on Parallel Processing for Scientific Computing
SIAM. 1995: 149–154
View details for Web of Science ID A1995BC53B00030
- Wave dispersion on a sheared current Applied Ocean Research 1994; 16: 313-315
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A STUDY OF CONCENTRATION BOUNDARY-LAYER FORMATION OVER A BED OF MODEL BIVALVES
LIMNOLOGY AND OCEANOGRAPHY
1993; 38 (8): 1712-1729
View details for Web of Science ID A1993MZ45900010
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COUPLED EFFECTS OF VERTICAL MIXING AND BENTHIC GRAZING ON PHYTOPLANKTON POPULATIONS IN SHALLOW, TURBID ESTUARIES
JOURNAL OF MARINE RESEARCH
1993; 51 (4): 843-868
View details for Web of Science ID A1993MT26300006
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SIMULATION AND STABILITY OF 2-DIMENSIONAL INTERNAL GRAVITY-WAVES IN A STRATIFIED SHEAR-FLOW
Ocean Sciences Meeting of the American-Geophysical-Union
ELSEVIER SCIENCE BV. 1993: 325–66
View details for Web of Science ID A1993MT48400013
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AXISYMMETRICAL SELECTIVE WITHDRAWAL IN A ROTATING STRATIFIED FLUID
JOURNAL OF FLUID MECHANICS
1993; 249: 287-305
View details for Web of Science ID A1993KZ44700014
- The effects of vertical mixing and benthic grazing on phytoplankton populations in shallow turbid estuaries J. Marine Res. 1993; 4 (51): 1-26
- An experimental study of concentration boundary layer formation over bivalve assemblages Limnology and Oceanography 1993; 8 (38): 1712-1729
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EXPERIMENTAL-STUDY OF WAVE-INDUCED LONGITUDINAL VORTICES
JOURNAL OF HYDRAULIC ENGINEERING-ASCE
1991; 117 (12): 1639-1649
View details for Web of Science ID A1991GQ58900006
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CONVECTIVE MOTIONS IN THE SIDEARM OF A SMALL RESERVOIR
LIMNOLOGY AND OCEANOGRAPHY
1990; 35 (8): 1676-1702
View details for Web of Science ID A1990FE65500002
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A STUDY OF MODEL BIVALVE SIPHONAL CURRENTS
LIMNOLOGY AND OCEANOGRAPHY
1990; 35 (3): 680-696
View details for Web of Science ID A1990DW93500010
- Horizontal convection in the sidearm of a small reservoir Limnology and Oceanography 1990; 35: 1676-1702
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SELECTIVE WITHDRAWAL AND SPIN-UP OF A ROTATING STRATIFIED FLUID
JOURNAL OF FLUID MECHANICS
1989; 199: 377-401
View details for Web of Science ID A1989T505800015
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SHEAR-WAVES AND UNSTEADY SELECTIVE WITHDRAWAL
JOURNAL OF HYDRAULIC ENGINEERING-ASCE
1988; 114 (9): 1134-1152
View details for Web of Science ID A1988P922100010
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DIFFERENTIAL MIXING IN A STRATIFIED FLUID
JOURNAL OF FLUID MECHANICS
1988; 189: 571-598
View details for Web of Science ID A1988N250000027
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MODAL RESPONSE OF RESERVOIRS TO WIND STRESS
JOURNAL OF HYDRAULIC ENGINEERING-ASCE
1987; 113 (10): 1290-1306
View details for Web of Science ID A1987K120500005
- The modal response of reservoirs to wind stress J. Hydr. Div. ASCE 1987; HY10 (110): 1290-1326
- An experimental study of the upwelling response of stratified reservoirs to shear stress Journal of Fluid Mechanics 1986; 171: 407-439
- Wind forced motions in stratified lakes and their effects on mixed-layer shear Limnology and Oceanography 1985; 30 (4): 771-783