School of Humanities and Sciences
Showing 1-38 of 38 Results
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Michael Edward Palmer
Affiliate, Biology
Visiting Scholar, BiologyBioI'm visiting the Marc Feldman Lab while writing my book, "Clade Thinking: The Macroevolution of Recursive Clades and the Evolution of Evolvability". The motivating question of the book is, "Can macroevolution be reduced to merely the repeated iteration of microevolution?" (Answer: no, you would be missing a lot.)
I'm also doing some machine learning (ML) applied to genomics with the Fraser Lab, related to the evolution of cis-regulatory elements (CREs), which are involved in a lot of recent/rapid evolution in, say, mammals. We are doing what we call "in silico genome transplants": placing DNA variants from one species into the (ML-modeled) cellular environment of another species (or cell type, or individual with some pathology, etc.). We analyze changes in gene expression to detect various modes of selection on CREs.
I got my B.S. in Physics at Yale, and my Ph.D. in Computer Science at the California Institute of Technology. I've gone back and forth between academia (computational biology) and the tech industry in Silicon Valley. -
Stephen Palumbi
Jane and Marshall Steel Jr. Professor of Marine Sciences, Professor of Oceans and of Biology
Current Research and Scholarly InterestsWe're interested in ecological, evolutionary, and conservation questions related to marine (and sometimes terrestrial) organisms and ecosystems. We use evolutionary genetics and molecular ecology techniques, and our fieldwork takes us all around the world. Currently, we're studying coral diversity, the adaptive potential of corals in response to climate change, the movement of organisms between marine reserves, genetic changes in abalone in response to environmental.
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Chenjie Pan
Basic Life Res Scientist
BioI obtained my PhD from Dr. Xiaodong Wang's lab, National Institute of Biological Sciences, Beijing/Tsinghua University. My major work during PhD is on the biochemical mechanism of myelin breakdown. I have expertise in in-tissue immunoprecipitation and pain behavior. Now I am working on axon guidance, degeneration, and plasticity in Dr. Marc Tessier-Lavigne's lab in Department of Biology.
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Jonathan Payne
Dorrell William Kirby Professor, Senior Associate Dean for Faculty Affairs, Senior Fellow at the Woods Institute for the Environment and Professor, by courtesy, of Biology
Current Research and Scholarly InterestsMy goal in research is to understand the interaction between environmental change and biological evolution using fossils and the sedimentary rock record. How does environmental change influence evolutionary and ecological processes? And conversely, how do evolutionary and ecological changes affect the physical environment? I work primarily on the marine fossil record over the past 550 million years.
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Kabir Peay
Senior Associate Dean for Education, Director of the Earth Systems Program, Professor of Biology, of Earth System Science and Senior Fellow at the Woods Institute for the Environment
Current Research and Scholarly InterestsOur lab studies the ecological processes that structure natural communities and the links between community structure and the cycling of nutrients and energy through ecosystems. We focus primarily on fungi, as these organisms are incredibly diverse and are the primary agents of carbon and nutrient cycling in terrestrial ecosystems. By working across multiple scales we hope to build a 'roots-to-biomes' understanding of plant-microbe symbiosis.
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Deshan Perera
Postdoctoral Scholar, Biology
BioI am a Stanford Data Science Postdoctoral Scholar in the Department of Biology at Stanford University, supervised by Prof. Hunter Fraser. My research focuses on evolutionary dynamics and the development of high-performance computational tools to analyze complex biological systems. I earned my Ph.D. in Bioinformatics from the University of Calgary, Canada, where I investigated within-host evolution in pathogen genomics and cancer. Originally from Sri Lanka, I hold a First Class B.Sc. (Hons) in Biology from the University of Sri Jayewardenepura. I am passionate about advancing computational biology through the design and implementation of scalable software solutions that leverage GPU, CPU, and SSD architectures for large-scale genomic and evolutionary analysis.
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Dmitri Petrov
Michelle and Kevin Douglas Professor in the School of Humanities and Sciences
Current Research and Scholarly InterestsEvolution of genomes and population genomics of adaptation and variation
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Jonathan Pritchard
Bing Professor of Population Studies, Professor of Genetics and Biology
Current Research and Scholarly InterestsWe are interested in a broad range of problems at the interface of genomics and evolutionary biology. One current focus of the lab is in understanding how genetic variation impacts gene regulation and complex traits. We also have long-term interests in using genetic data to learn about population structure, history and adaptation, especially in humans.
FOR UP-TO-DATE DETAILS ON MY LAB AND RESEARCH, PLEASE SEE: http://pritchardlab.stanford.edu
