School of Medicine
Showing 301-378 of 378 Results
-
Serena Sanulli
Assistant Professor of Genetics
Current Research and Scholarly InterestsWe study the organizing principles of the genome and how these principles regulate cell identity and developmental switches. We combine Biochemistry and Biophysical methods such as NMR and Hydrogen-Deuterium Exchange-MS with Cell Biology, and Genetics to explore genome organization across length and time scales and understand how cells leverage the diverse biophysical properties of chromatin to regulate genome function.
-
Gavin Sherlock
Professor of Genetics
Current Research and Scholarly InterestsEvolution and the adaptive landscape using yeast as a model; Defining yeast transcriptomes; chromosomal evolution in hybrid yeast species
-
Mahasish Shome
Postdoctoral Scholar, Genetics
BioDr. Mahasish Shome is interested in understanding the underlying mechanism of disease progression. He uses various omics profiling to identify biomarkers relevant to the disease. He studies antibodies, cytokines, proteins and microbiome profile to decipher the connection of disease with markers. Connecting various omics provide a holistic overview of the disease profile and can help in early diagnosis, understanding disease state and drug/vaccine effectiveness.
-
Arend Sidow
Professor of Pathology and of Genetics
Current Research and Scholarly InterestsWe have a highly collaborative research program in the evolutionary genomics of cancer. We apply well-established principles of phylogenetics to cancer evolution on the basis of whole genome sequencing and functional genomics data of multiple tumor samples from the same patient. Introductions to our work and the concepts we apply are best found in the Newburger et al paper in Genome Research and the Sidow and Spies review in TIGS.
More information can be found here: http://www.sidowlab.org -
Michael Snyder, Ph.D.
Stanford W. Ascherman Professor of Genetics
Current Research and Scholarly InterestsOur laboratory use different omics approaches to study a) regulatory networks, b) intra- and inter-species variation which differs primarily at the level of regulatory information c) human health and disease. For the later we have established integrated Personal Omics Profiling (iPOP), an analysis that combines longitudinal analyses of genomic, transcriptomic, proteomic, metabolomic, DNA methylation, microbiome and autoantibody profiles to monitor healthy and disease states
-
Lars Steinmetz
Dieter Schwarz Foundation Endowed Professor
Current Research and Scholarly InterestsThe Steinmetz lab develops genomic technologies to study the genetic basis of complex phenotypes, the mechanisms of gene regulation, and the molecular systems underpinning disease. We’re leveraging biological insights across scales and organisms to predict, diagnose, treat and ultimately prevent disease.
-
Han Sun
Postdoctoral Scholar, Genetics
Biostatistician 2, Pediatrics - EndocrinologyBioHan had been a postdoc with Dr. Steinmetz at the genetics department for five years, working on both cancers and heart diseases, trying to understand the mechanisms linking from variants to disease phenotypes. This led to a few very interesting findings of aberrant splicing regulation, such as splicing-mediated readthrough stabilization (SRS), one more mechanism for oncogene activation in multiple types of cancers, and tissue-specific splicing of a mitochondrial inner membrane protein, suggesting a molecular connection between deficiency in energy-supplying and dilated cardiomyopathy.
After being a senior computational biologist with Dr. Gloyn, who has been dedicated to the research of type 2 diabetes for decades, Han switched to the field of this multifactorial metabolic disease. It did take some courage to make such a switch at his post-postdoc stage, however, Han has a consistent interest in studying PG&E, which is not pacific gas and electric nearby, but the interaction between phenotype, genotype, and environment. With years of hands-on experience in statistical modeling and the analysis of next-generation sequencing and mass spectrometry data, in addition to a good understanding of disease genetics, cancer biology, and systems biology, Han is highly confident that he will enjoy the adventure and contribute to our understanding of diabetes. -
Vidyani Suryadevara
Instructor, Genetics
Current Research and Scholarly InterestsA Bioengineer by training, she has a breadth of experiences across different scientific disciplines including pulmonary diseases, Alzheimer’s disease, and musculoskeletal disorders, wherein her research projects involved unraveling signaling mechanism behind the disease in order to identify new therapeutic targets and developing imaging modalities for early diagnosis of the disease, thus eventually improving the quality of life in patients. Her current work has been centered around age-associated pathophysiologies like osteoarthritis and Alzheimer's Disease. Her research currently focuses on the clinical translation of a novel noninvasive multimodality imaging approach to detect senescence in osteoarthritis and Alzheimer's Disease and understand the senescence biology in these age-associated diseases.
She has led teams of renowned senescence scientists across the US to develop expert recommendations for biomarkers for senescence. She is also a faculty fellow in the Center for Innovation at Global Health, wherein her focus is to develop region-specific lifestyle interventions to prevent dementia. -
Hua Tang
Professor of Genetics and, by courtesy, of Statistics
Current Research and Scholarly InterestsDevelop statistical and computational methods for population genomics analyses; modeling human evolutionary history; genetic association studies in admixed populations.
-
Alice Ting
Professor of Genetics, of Biology and, by courtesy, of Chemistry
Current Research and Scholarly InterestsWe develop chemogenetic and optogenetic technologies for probing and manipulating protein networks, cellular RNA, and the function of mitochondria and the mammalian brain. Our technologies draw from protein engineering, directed evolution, computational design, chemical biology, organic synthesis, microscopy, and genomics.
-
Artem A. Trotsyuk, Ph.D.
Postdoctoral Scholar, Genetics
BioDr. Artem A. Trotsyuk is an AI Fellow in the Department of Genetics at Stanford University and an AI Special Projects Fellow at the Hoover Institution. He earned his PhD in Bioengineering and a Master’s in Computer Science with an AI specialization at Stanford, under the supervision of Dr. Geoffrey Gurtner in the Department of Surgery. He was co-advised by Dr. Zhenan Bao (Chemical Engineering), Dr. Russ Altman (Bioengineering and Medicine), and Dr. Michael Snyder (Genetics). His doctoral research focused on developing a smart bandage that integrates a closed-loop AI processing system for wound sensing and therapeutic delivery. His current work centers on evaluating AI tools in biomedicine, as well as special projects related to security, intent capture, and persona modeling.
-
Alun Vaughan Jackson
Postdoctoral Scholar, Genetics
BioCollaborative postdoctoral fellow between the groups of Prof. Michael Bassik (Stanford) and Dr Andreas Puschnik (CZ Biohub) interested in host-virus interactions with the innate immune system.
-
Anne Villeneuve
Berthold and Belle N. Guggenhime Professor and Professor of Developmental Biology and of Genetics
Current Research and Scholarly InterestsMechanisms underlying homologous chromosome pairing, DNA recombination and chromosome remodeling during meiosis, using the nematode Caenorhabditis elegans as an experimental system. High-resolution 3-D imaging of dynamic reorganization of chromosome architecture. Role of protease inhibitors in regulating sperm activation.
-
Elisa Mariel Visher
Postdoctoral Scholar, Genetics
Current Research and Scholarly InterestsElisa Visher is broadly interested in the (co)evolution of life history strategies, niche breadth, diversification, and adaptability. They use mostly experimental evolution methods in microbial systems to test the predictions and assumptions of theoretical literature. Currently, they am especially interested in understanding the genetics of trade-offs in microbes to better understand patterns of diversity in nature and constraints to adaptation.
-
Douglas Vollrath
Professor of Genetics, Emeritus
Current Research and Scholarly InterestsThe Vollrath lab works to uncover molecular mechanisms relevant to the health and pathology of the outer retina. We study metabolic and other cellular interactions between the glial-like retinal pigment epithelium (RPE) and adjacent photoreceptors, with the goals of understanding the pathogenesis of photoreceptor degenerative diseases such as age-related macular degeneration and retinitis pigmentosa, and developing therapies.
-
Tao Wang (王韬)
Director of Precision Diabetes Care, Genetics
Current Role at StanfordPrincipal Investigator, AI for Precision Diabetes Management
Project Manager & Scientific Co-lead, PsychENCODE Project
Project Initiator & Clinical Co-lead, Long COVID Clinical RCT with TCM
Project Initiator & Manager, AI & Wearables Toolkit for Biomedical Sciences
ENCODE and PsychENCODE Project Data Manager
Research Scientist, US Veteran Affairs Hospital
SCGPM HPC System Administrator -
Tauska Lan
Affiliate, Genetics - BASE
BioI'm an ML engineer specializing in LLM post-training and agentic systems—with a particular focus on domains where rigor matters: health, biology, and scientific discovery.
Long-horizon agents — Designed and shipped multi-step orchestration systems (Pantheon-CLI, OmicVerse Agent) that outperform general SWE-agent baselines on biomedical tasks. Built cross-provider query routing and sandboxed execution to keep complex workflows robust over extended interactions. My agents don't just respond—they plan, recover from failure, and complete real research pipelines end-to-end.
Agentic science — Created infrastructure where AI doesn't assist research—it conducts it. Vectorized 30 years of NHANES data; parallelized Bayesian kernel machine regression on Kubernetes; built TCGA/GEO pipelines that bridge wet-lab and dry-lab workflows. Co-developed OmicVerse, an open-source platform powering reproducible multi-omics and single-cell analyses across hundreds of studies.
Experience engineering — Scaled rubric-based reward datasets to 1M+ pairs; trained summary and chain-of-thought reward models via RLAIF/RLHF; delivered measurable benchmark lifts in health AI. I care about the full loop: data curation → reward shaping → careful ablation → verifiable outcome—no cherry-picked demos—just metrics that survive scrutiny.
Currently pursuing advanced agentic studies at Karolinska Institutet and Stanford!
Open-source: OmicVerse · Pantheon-CLI · RAG Web UI · AstrBot
If you're working on post-training at scale, scientific agents, or high-integrity data pipelines—I'm always interested in systems that move from promising results to verifiable outcomes. Let's talk. -
Shannon White
Postdoctoral Scholar, Genetics
BioHi, I'm Shannon White. I began my postdoctoral fellowship in Michael Snyder's lab in the fall of 2020. I received my PhD from Georgetown University in Tumor Biology in Chunling Yi's lab. My graduate worked explore the signaling and metabolic vulnerabilities of NF2-mutant tumors following YAP/TAZ depletion. My postdoctoral work is exploring the epigenetic hallmarks that contribute to colon cancer progression and drug resistance. I am developing colon organoids derived from pre-cancerous polyp tissue collected from Familial Adenomatous Polyposis patients as a model system to investigate epigenetic and signaling responses to chemoprevention treatments.
-
Monte Winslow
Associate Professor of Genetics and of Pathology
Current Research and Scholarly InterestsOur laboratory uses genome-wide methods to uncover alterations that drive cancer progression and metastasis in genetically-engineered mouse models of human cancers. We combine cell-culture based mechanistic studies with our ability to alter pathways of interest during tumor progression in vivo to better understand each step of metastatic spread and to uncover the therapeutic vulnerabilities of advanced cancer cells.
-
John Witte
Professor of Epidemiology and Population Health, of Biomedical Data Science and of Genetics
Current Research and Scholarly InterestsThe Witte Lab is a computational and statistical genetics group focused on deciphering the genetic and molecular mechanisms underlying cancer and other complex traits. We undertake integrative analyses across large multi-ancestry cohorts and biobanks, developing and applying methods at the interface of epidemiology, statistical genetics, and machine learning.
-
Yue Wu
Postdoctoral Scholar, Genetics
Current Research and Scholarly InterestsI built computational methods to integrate and model biological time series, including metabolic dynamics, longitudinal multi-omics data, and micro-sampling. I reduce dimensions, built clusters, and search for causal links.
-
Lei Xiong
Postdoctoral Scholar, Genetics
Current Research and Scholarly InterestsMy research focuses on develop deep learning methods to
1. Infer macrophage-tumor cells interaction using spatial multi-omics
2. Decipher the cis-regulatory code using a large language models
3. Predict enhancer-promoter interaction
4. Multi-omics integration
5. Build foundational model for single-cell genomics -
Weize Xu
Postdoctoral Scholar, Genetics
BioDr. Weize Xu is a postdoctoral researcher in Dr. Xiaojie Qiu's laboratory, where he focuses on advancing computational biology and genomics research. He earned his Ph.D. in Dr. Gang Cao's lab, where he made significant contributions to the development of computational methods and pipelines for spatial transcriptomics (MiP-Seq) and single-cell Hi-C (sciDLO Hi-C). His work during this time centered on enhancing data analysis frameworks, providing more precise insights into complex biological systems.
Dr. Xu is also an expert in the development of bioimaging processing softwares. During his Ph.D., he developed the U-FISH method, a deep learning-based approach for detecting signal points in FISH images. This innovative project involved curating a high-quality dataset from diverse sources, ensuring robust performance across various FISH data types. The resulting model demonstrated outstanding generalizability and included a user-friendly Web and LLM interface, making it accessible to researchers worldwide.
In addition to his Ph.D. research, Dr. Xu further honed his skills at SciLifeLab, where he worked under the mentorship of Dr. Wei Ouyang. There, he focused on web programming and developing key components for the Bioimage.IO deep learning platform, gaining valuable experience in creating innovative tools for computational biology.
With a solid foundation in computational biology, deep learning, and bioinformatics, Dr. Xu is passionate about driving cutting-edge research and contributing new perspectives to his field. He brings a unique combination of technical expertise and a collaborative mindset to his role in Dr. Xiaojie Qiu’s lab. -
Jielin Yan
Postdoctoral Scholar, Genetics
Current Research and Scholarly InterestsI'm interested in understanding how the human genome orchestrates cell fate decisions in development and disease by using high-throughput perturbation and screening methods.
-
Zehua Zeng
Graduate Visiting Researcher Student, Genetics
BioZehua Zeng is currently a visiting PhD Student at the Qiu lab of Department of Genetics at Stanford. Zehua’s Ph.D. work at University of Science and Technology Beijing with Dr. Hongwu Du and Sun-Yet-sen University with Yuanyan Xiong made critical contributions to the field of multi omics analysis and Agent systems, exemplified by the development of OmicVerse for building one of the largest multi-comics algorithm community.
