Stanford University
Showing 1-100 of 500 Results
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Franz Ake
Postdoctoral Scholar, Pathology
BioDr. Ake is a computational biologist specializing in single-cell transcriptomics, alternative polyadenylation, and isoform regulation. His research focuses on developing computational methods and bioinformatic pipelines to characterize post-transcriptional regulation and differential isoform usage at single-cell resolution. During his PhD under the mentorship of Dr. Mireya Plass at the University of Barcelona and the IDIBELL Research Institute in Barcelona, Spain, he developed approaches for isoform quantification and the analysis of differential isoform usage in single-cell datasets.
Currently, his research at Stanford University focuses on multi-omics data integration, with a particular emphasis on spatial transcriptomics and cancer genomics to study tumor biology, tissue heterogeneity, and disease-associated molecular programs from high-dimensional sequencing data. -
Kimberly Allison
Professor of Pathology
Current Research and Scholarly InterestsDr. Allisons clinical expertise is in breast pathology. Her research interests include how standards should be applied to breast cancer diagnostics (such as ER and HER2 testing), the utility of molecular panel-based testing in breast cancer, digital pathology applications and identifying the most appropriate management of specific pathologic diagnoses.
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Michael Angelo
Associate Professor of Pathology
BioMichael Angelo, MD PhD is a board-certified pathologist and assistant professor in the department of Pathology at Stanford University School of Medicine. Dr. Angelo is a leader in high dimensional imaging with expertise in tissue homeostasis, tumor immunology, and infectious disease. His lab has pioneered the construction and development of Multiplexed Ion Beam Imaging by time of flight (MIBI-TOF). MIBI-TOF uses secondary ion mass spectrometry and metal-tagged antibodies to achieve rapid, simultaneous imaging of dozens of proteins at subcellular resolution. In recognition of this achievement, Dr. Angelo received the NIH Director’s Early Independence award in 2014. His lab has since used this novel technology to discover previously unknown rule sets governing the spatial organization and cellular composition of immune, stromal, and tumor cells within the tumor microenvironment in triple negative breast cancer. These findings were found to be predictive of single cell expression of several immunotherapy drug targets and of 10-year overall survival. This effort has led to ongoing work aimed at elucidating structural mechanisms in the TME that promote recruitment of cancer associated fibroblasts, tumor associated macrophages, and extracellular matrix remodeling. Dr. Angelo is the recipient of the 2020 DOD Era of Hope Award and a principal investigator on multiple extramural awards from the National Cancer Institute, Breast Cancer Research Foundation, Parker Institute for Cancer Immunotherapy, the Bill and Melinda Gates Foundation, and the Human Biomolecular Atlas (HuBMAP) initiative.
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Christopher Maximilian Arends
Postdoctoral Scholar, Pathology
Current Research and Scholarly InterestsUsing genetic models of large-scale biobanks in combination with experimental models to study hallmarks of hematopoietic stem cell ageing, such as age-related myeloid-bias and clonal hematopoieisis.
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Euan A. Ashley
Roger and Joelle Burnell Professor of Genomics and Precision Health, Arthur L. Bloomfield Professor of Medicine and Professor of Genetics, of Biomedical Data Science and, by courtesy, of Pathology
Current Research and Scholarly InterestsThe Ashley lab is focused on precision medicine. We develop methods for the interpretation of whole genome sequencing data to improve the diagnosis of genetic disease and to personalize the practice of medicine. At the wet bench, we take advantage of cell systems, transgenic models and microsurgical models of disease to prove causality in biological pathways and find targets for therapeutic development.
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Jeffrey Axelrod
Professor of Pathology
Current Research and Scholarly InterestsGenetic and cell biological analyses of signals controlling cell polarity and morphogenesis. Frizzled signaling and cytoskeletal organization.
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Brendan Ball
Postdoctoral Scholar, Pathology
Current Research and Scholarly InterestsSystems Biology, Computational Modeling, Data Science
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Niaz Banaei
Professor of Pathology and of Medicine (Infectious Diseases)
Current Research and Scholarly InterestsHis research interests include (1) development, assessment, and improvement of novel infectious diseases diagnostics, (2) enhancing the quality of C. difficile diagnostic results, and (3) characterization of M. tuberculosis virulence determinants.
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Ellen Jo Baron
Professor of Pathology at the Stanford University Medical Center, Emerita
Current Research and Scholarly InterestsNo current scientific activities. I am retired.
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Dr. Gregory Bean
Associate Professor of Pathology
BioDr. Bean is an Associate Professor who specializes in breast pathology. His research interests include molecular characterization of breast cancer subtypes and precursors. He is also involved with the training of residents and fellows on the breast service.
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Sean Bendall
Associate Professor of Pathology
Current Research and Scholarly InterestsOur goal is to understand the mechanisms regulating the development of human systems. Drawing on both pluripotent stem cell biology, hematopoiesis, and immunology, combined with novel high-content single-cell analysis (CyTOF – Mass Cytometry) and imagining (MIBI-Multiplexed Ion Beam Imaging) we are creating templates of ‘normal’ human cellular behavior to both discover novel regulatory events and cell populations as well as understand dysfunctional processes such as cancer.
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Gerald Berry
Richard Kempson, M.D., Professor of Surgical Pathology
Current Research and Scholarly InterestsCardiopulmonary and pulmonary transplant medicine; diagnostic surgical pathology
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David Bingham
Clinical Associate Professor, Pathology
BioDavid Bingham MD is a clinical assistant pathologist specializing in gastrointestinal pathology. He is from Connecticut, graduated from Yale with a BA, and went to Columbia P&S for medical school. He did a residency in Pathology at Stanford University, graduated in 1992 and has been here ever since as a faculty member.
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Matthew Bogyo
Professor of Pathology and of Microbiology and Immunology and, by courtesy, of Chemical and Systems Biology
Current Research and Scholarly InterestsOur lab uses chemical, biochemical, and cell biological methods to study protease function in human disease. Projects include:
1) Design and synthesis of novel chemical probes for serine and cysteine hydrolases.
2) Understanding the role of hydrolases in bacterial pathogenesis and the human parasites, Plasmodium falciparum and Toxoplasma gondii.
3) Defining the specific functional roles of proteases during the process of tumorogenesis.
4) In vivo imaging of protease activity -
Raffick A.R. Bowen
Clinical Professor, Pathology
Current Research and Scholarly InterestsMy current research involves the investigation of immunoassay interferences from blood collection tube additives; particularly, silicone surfactants.
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Scott D. Boyd, MD PhD
Stanford Professor of Food Allergy and Immunology and Professor of Pathology
Current Research and Scholarly InterestsOur goal is to understand the lymphocyte genotype-phenotype relationships in healthy human immunity and in immunological diseases. We apply new technologies and data analysis approaches to this challenge, particularly high-throughput DNA sequencing and single-cell monoclonal antibody generation, in parallel with other functional assays.
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Ryanne Ashley Brown, MD, MBA
Clinical Associate Professor, Pathology
Clinical Associate Professor (By courtesy), DermatologyBioRyanne Brown, M.D., M.B.A., is a Clinical Assistant Professor of Pathology and (by courtesy) Dermatology. She completed her residency training in Anatomic and Clinical Pathology followed by Surgical Pathology and Dermatopathology fellowships at Stanford. She is board certified in both Anatomic Pathology and Clinical Pathology (American Board of Pathology) and Dermatopathology (American Boards of Pathology/Dermatology). Her interests include cutaneous lymphoma and histiocytic neoplasms.
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Lawrence Walden Browne ("Walden")
Clinical Associate Professor, Pathology
BioI am an Anatomic and Clinical Pathologist with sub-specialty Fellowship training in Liver and Gastrointestinal Pathology. Prior to my career in medicine I earned a doctorate from Stanford University in Spanish and Comparative Literature.
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Eugene Butcher
Klaus Bensch Professor of Pathology
Current Research and Scholarly InterestsOur interests include:
-Lymphocyte migration and vascular specialization in immunity and inflammation;
-Single-cell and multi-omics dissection of vascular and immune system heterogeneity;
-AI-driven deorphanization of GPCRs and ligand discovery
-Reprogramming of vascular and immune niches in immunity and tolerance;
-Systems biology of immune cell targeting in health and disease -
Bryan James Cannon
Affiliate, Pathology Operations supported expenses #2
BioBryan J. Cannon is a graduate student at Stanford University, pursuing a PhD in Computational & Systems Immunology, with research focused on studying the cellular and acellular composition of human neurodegeneration using hi-dimensional imaging and sequencing datasets. He has experience in computational immunology, including multiplex ion beam imaging technology, image segmentation, and multi-dimensional analysis pipelines, as well as expertise in R, Matlab, and Python programming languages. Prior to Stanford, he worked as a Project Associate at NASA Ames Research Center and a Research Assistant at the Autoimmune & Rheumatology Lab, Bone Research Lab, and Cardiac Surgery Lab. Additionally, he has been involved in advocacy work, including mentoring high school students in summer research, working on a project for diversity and inclusion in immunology, giving lectures for the EXPLORE Lecture Series, and mentoring first-generation and low-income students at Stanford.
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Bettia Edith Celestin
Postdoctoral Scholar, Pathology
Current Research and Scholarly InterestsMy research focuses on advanced echocardiographic imaging of the right heart and pulmonary circulation, with a strong emphasis on integrating artificial intelligence and deep learning into clinical cardiology. I led cardiovascular phenotyping for NIH-funded immune aging cohort and am developing a research program in women's cardiovascular health, including sex-specific imaging phenotypes and the cardiovascular consequences of adverse pregnancy outcomes across the menopausal transition.
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Emily Chan
Associate Professor of Pathology (Clinical Pathology)
BioDr. Chan is an Associate Professor of Pathology at Stanford University. She completed her MD, PhD at New York University and Anatomic Pathology residency with subspecialty Genitourinary Pathology training at University of California-San Francisco (UCSF). She is AP board-certified. Dr. Chan was a GU attending at UCSF for five years before joining Stanford to lead the Genitourinary Pathology Service and Fellowship. She has successfully mentored numerous trainees in projects, publications, and career planning. Dr. Chan has co-authored more than 70 peer-reviewed research publications and has a particular interest in integrating molecular testing in diagnostic pathology, as well as recognition of prostate cancer architectural patterns than can help with prognosis and treatment decision making.
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Howard Y. Chang, MD, PhD
Virginia and D. K. Ludwig Professor of Cancer Research, Professor of Genetics and, by courtesy, of Pathology
Current Research and Scholarly InterestsOur research is focused on how the activities of hundreds or even thousands of genes (gene parties) are coordinated to achieve biological meaning. We have pioneered methods to predict, dissect, and control large-scale gene regulatory programs; these methods have provided insights into human development, cancer, and aging.
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Vivek Charu
Assistant Professor of Pathology and of Medicine (Computational Medicine)
BioI am a physician and a biostatistician. My clinical expertise is in the diagnosis of non-neoplastic kidney and liver disease (including transplantation). My research interests center on the design of observational studies and clinical trials, the analysis of observational data, and causal inference.
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Greg Charville, MD, PhD
Associate Professor of Pathology
BioDr. Charville has a special interest in the diagnosis of rare tumors that derive from bone and soft tissues, including muscle, fat, blood vessels, cartilage, and other connective tissues. He also specializes in the classification and study of diseases related to the gastrointestinal and hepatopancreatobiliary systems.
Dr. Charville particularly enjoys working alongside Stanford's excellent physicians-in-training to classify the most diagnostically challenging cases in collaboration with pathologists from around the world, bringing to bear cutting-edge techniques for comprehensive histologic and molecular characterization in each case. This experience serves as the inspiration for laboratory-based investigation of the molecular underpinnings of human disease, focusing on genetic and epigenetic mechanisms of neoplasia and the translation of these mechanistic insights into novel diagnostic and predictive biomarkers. -
Michael Cleary
Lindhard Family Professor of Pediatric Cancer Biology and Professor of Pathology, Emeritus
Current Research and Scholarly InterestsThe role of oncoproteins in cancer and development; molecular and cellular biology of hematologic malignancies; targeted molecular therapies of cancer.
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Laetitia Coassolo (Voilquin)
Senior Research Scientist - Basic Life, Pathology Sponsored Projects
Current Role at StanfordI am a Senior Research Scientist in Dr. Katrin Svensson's lab. I am interested in mapping tissue-specific peptide secretion to identify orphan peptide hormones.
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Maria Inmaculada Cobos Sillero
Associate Professor of Pathology
Current Research and Scholarly InterestsOur lab uses cellular and molecular methods, single-cell technology, and quantitative histology to study human neurodegenerative diseases. Current projects include:
- Using single-cell RNA-sequencing to understand selective vulnerability and disease progression in human Alzheimer’s disease brain
- Investigating mechanisms of tau-related neurodegeneration in human brain
- Studying the neocortical and limbic systems in Diffuse Lewy Body Disease (DLBD) at the single cell level -
Le Cong
Associate Professor of Pathology (Pathology Research) and of Genetics
Current Research and Scholarly InterestsOur lab develops gene-editing technologies like novel CRISPR systems and large gene insertion techniques for gene and cell therapy. We also leverage these gene-editing tools for single-cell functional screening to probe mechanisms of cancer, immunological, and aging-associated diseases. To accelerate our work, we integrate AI and machine learning to design and evolve therapeutic RNAs/proteins, and build AI-XR co-scientists like LabOS that bridge AI computation and biomedical experimentation.
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Joanne Cornbleet
Associate Professor of Pathology at the Stanford University Medical Center, Emerita
Current Research and Scholarly InterestsAs medical director of the Hematology Laboratory, my main focus is service work, including laboratory administration, bone marrow pathology, and flow cytometry interpretation. Publications arise primarily from development or evaluation of laboratory methods or collections of unusual patient cases.
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Tina Cowan
Professor of Pathology (Clinical) and, by courtesy, of Pediatrics (Genetics)
Current Research and Scholarly Interestsscreening and diagnosis of patients with inborn errors of metabolism, including newborn screening, development of new testing methods and genotype/phenotype correlations.
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Gerald Crabtree
David Korn, MD, Professor of Pathology and Professor of Developmental Biology
Current Research and Scholarly InterestsChromatin regulation and its roles in human cancer and the development of the nervous system. Engineering new methods for studying and controlling chromatin and epigenetic regulation in living cells.
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Ronaldo Francisco Jr
Affiliate, Pathology Clinical Faculty PTAs
BioI am a geneticist focused on the application of computational and statistical methods to study genetic mechanisms of disease. My research interests include (i) genomic and precision medicine; (ii) detection and analysis of genetic variants using NGS data (WGS, WES, RNA-Seq); and (iii) transcriptome and allele-specific expression.
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John W. Day, MD, PhD
Professor of Neurology and Neurological Sciences (Adult Neurology), of Pediatrics (Genetics) and, by courtesy, of Pathology
Current Research and Scholarly InterestsOur Neuromuscular Division coordinates a comprehensive effort to conquer peripheral nerve and muscle disorders, including the muscular dystrophies, motor neuron disorders, neuromuscular junction abnormalities, and peripheral neuropathies. With patients and families foremost in mind, we have had success defining and combating these diseases, with research focused on identifying genetic causes, developing novel treatment, and maximizing patient function by optimizing current management.
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Dr. Qiwen Deng
Postdoctoral Scholar, Pathology
BioMy research aims to understand how immune–stromal interactions shape tissue injury, repair, and fibrosis across chronic diseases. I combine multiplexed spatial proteomics (CODEX), single-cell and spatial transcriptomics, and molecular pathology approaches to dissect the organization and function of complex tissue microenvironments. By mapping spatially resolved cellular neighborhoods in human biopsies, I seek to uncover conserved and disease-specific patterns that can guide biomarker discovery and therapeutic development.
Working within a laboratory focused on the mechanisms and therapeutic targeting of fibrotic diseases, I investigate chronic kidney disease alongside other models of organ fibrosis. With a background spanning molecular biology, therapeutic development, and spatial biology, I aim to advance studies that connect detailed tissue analysis with potential clinical applications. I welcome opportunities for collaborative research in chronic kidney disease and other fibrosis-related conditions. -
Dylan Dodd
Associate Professor of Pathology and of Microbiology and Immunology
Current Research and Scholarly InterestsHarnessing the gut microbiome to treat human disease.
