School of Medicine
Showing 201-300 of 358 Results
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Xiangping Lin
Postdoctoral Scholar, Genetics
BioXiangping Lin, Ph.D., is a Postdoctoral Scholar at Stanford University. He received his Ph.D. in Chemistry from Sorbonne Paris North University, Paris. Dr. Lin’s research focuses on analytical chemistry, especially mass spectrometry (Orbitrap, Q-TOF, QqQ) and NMR-based omics studies. These include, but are not limited to, metabolomics, exposomics, lipidomics, and the application in biomedical and environmental research, such as metabolism, liver disease, cancer, environmental chemicals exposure biomarkers. In addition, he has extensive experience in multivariate statistics (PCA, PLS-DA, et cetera.), variable selection (logistic regression, LASSO regression, et cetera.), and R programming. In his free time, he enjoys going to the gym, playing badminton (he organizes the Stanford postdoc badminton club), swimming, fitness, cuisine, traveling, and spending time with family and friends.
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Lorraine Ling
Postdoctoral Scholar, Genetics
Current Research and Scholarly InterestsMy research focuses on the cell biology and biochemistry underlying the symbiotic relationship between corals and their partners, microscopic algae of the genus Symbiodinium. The algae live in the coral's gut tissue and provide its host products of photosynthesis while the coral provides inorganic carbon, nitrogen, and a safe habitat. I'm investigating the signaling pathways involved in 1) recognizing the correct algae partner 2) transfer of nutrients between the two.
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Joseph (Joe) Lipsick
Professor of Pathology and of Genetics
On Partial Leave from 10/01/2024 To 12/31/2024Current Research and Scholarly InterestsFunction and evolution of the Myb oncogene family; function and evolution of E2F transcriptional regulators and RB tumor suppressors; epigenetic regulation of chromatin and chromosomes; cancer genetics.
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Xin Liu
Basic Life Science Research Scientist, Genetics
BioXin Liu is a postdoctoral Research Scientist in the Department of Genetics at Stanford University. Xin holds a PhD in Chemistry from the University of Michigan, Ann Arbor. Her basic research interests include RNA and protein biochemistry, enzymology, cancer immunology, and autoimmune disease. She has published papers in several prestigious journals in the field of biochemistry, including Nature Communications, Journal of American Chemical Society, and Nucleic Acids Research. The highlight of her multidisciplinary research includes the development of high-throughput enzymatic methods to discover anti-microbial agents and to reveal mechanisms behind human mitochondrial diseases, as well as innovative applications of genome engineering and machine-learning to decode principles of RNA editing in human cells. Her current research focuses on the mechanistic study of innate immune pathways.
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Romain Lopez
Affiliate, Genetics
Visiting Postdoctoral Scholar, GeneticsBioSince Fall 2021, I am a joint postdoctoral scholar at Stanford University and Genentech Research and Early Development, hosted by Jonathan Pritchard and Aviv Regev. I recently obtained my PhD degree from the department of Electrical Engineering and Computer Sciences at UC Berkeley, advised by Mike Jordan & Nir Yosef. My research interests lie at the intersection of statistics, computation and modeling with a focus on biological applications.
A significant part of my research is driven by building more statistically accurate and faster machine learning software for analyzing single-cell omics data. I developed single-cell Variational Inference (scVI), a flexible model and a scalable inference method for comprehensive analysis of single-cell transcriptomes. I co-developed scvi-tools, an open-source software suite for fully-probabilistic modeling of single-cell multi-omics data. You may learn more about these topics in my guest lecture of the Deep Learning in the Life Sciences class at MIT.
More generally, I am interested in the broader area of ML + Science. Deep generative models provide an appealing and flexible paradigm for learning distributions, but quite some work is needed to fully exploit them as part of a scientific hypothesis testing pipeline (e.g., causality, interpretability, disentanglement, decision-making).
Previously, I worked on counterfactual inference and offline policy learning methods in collaboration with technology companies. In 2018, I visited Le Song at Ant Financial in Hangzhou. In 2019, I visited Inderjit Dhillon at Amazon in Berkeley. Before graduate school, I obtained a MSc in applied mathematics from Ecole polytechnique, Palaiseau in 2016. Additionally, I worked as an intern at the Harvard Medical School with Allon Klein in 2016. I was born and grew up in Bedarieux, France. -
Chris Mathy
Postdoctoral Scholar, Genetics
Current Research and Scholarly InterestsML for protein / cell engineering; synthetic mitochondrial genomes.
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Emmanuel Mignot, MD, PhD
Craig Reynolds Professor of Sleep Medicine and Professor, by courtesy, of Genetics and of Neurology and Neurological Sciences
Current Research and Scholarly InterestsThe research focus of the laboratory is the study of sleep and sleep disorders such as narcolepsy and Kleine Levin syndrome. We also study the neurobiological and genetic basis of the EEG and develop new tools to study sleep using nocturnal polysomnography. Approaches mostly involve human genetic studies (GWAS, sequencing), EEG signal analysis (deep learning), and immunology (narcolepsy is an autoimmune disease of the brain). We also work on autoimmune encephalitis.
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Pardis Miri
Postdoctoral Scholar, Genetics
BioPardis Miri, PhD, is a postdoctoral fellow at Stanford University where she is focused on building technology to facilitate mental well being. With a PhD in computer science and years of training in area of affective science (under the supervision of Professor James J. Gross), Pardis has assembled a unique team (see http://wehab.stanford.edu) to not only run clinical studies to evaluate their efficacy in changing emotion, mood, and stress but also build product-ready technology.
Pardis is the principal investigator of a large multi-disciplinary project (FAR) to design, build, and evaluate a wearable system tailored to the needs of children with emotion dysregulation, especially children diagnosed with autism spectrum disorder. FAR aims to empower them to manage their problem behaviors in a more adaptive way. The FAR project involves collaborations between the departments of Computer Science, Psychology, Mechanical Engineering, and the School of Medicine at Stanford University.
Pardis is being advised by Professors Micheal Snyder, Professor Keith Marzullo at the University of Maryland iSchool, whose research is on distributed systems, and by Professor James Gross, whose research underlies much of what we now know about emotion regulation. She is also working with Professor Antonio Hardan of the Stanford School of Medicine, whose research is on children with Autism Spectrum Disorder. -
Stephen B. Montgomery
Stanford Medicine Professor of Pathology, Professor of Genetics and of Biomedical Data Science
Current Research and Scholarly InterestsWe focus on understanding the effects of genome variation on cellular phenotypes and cellular modeling of disease through genomic approaches such as next generation RNA sequencing in combination with developing and utilizing state-of-the-art bioinformatics and statistical genetics approaches. See our website at http://montgomerylab.stanford.edu/
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Hetanshi Naik
Associate Professor (Teaching) of Genetics
BioHetanshi Naik is an Associate Professor in the Department of Genetics and the Research Director of the MS Program in Human Genetics and Genetic Counseling. She is a board certified genetic counselor and clinical researcher with clinical expertise in the inborn errors of heme biosynthesis, the Porphyrias, lysosomal storage disorders (LSDs), and pharmacogenomics, and research expertise in clinical trials, patient reported outcomes (PROs), qualitative methods, and study design.
Her research interests include developing and evaluating PROs for genetic disorders and genomics, in particular assessing PROs as outcomes for clinical trials, pharmacogenomics implementation, and genetic counseling education and processes, as well as utilizing digital health technologies to improve clinical care, genetic counseling, patient reporting, trial efficacy, and outcomes. -
Ramesh Nair
Director of Bioinformatics, SCGPM, Genetics
Current Role at StanfordDirector, Bioinformatics
Stanford Center for Genomics and Personalized Medicine (SCGPM)
Bioinformatics-as-a-Service (BaaS)
Genetics Bioinformatics Service Center (GBSC)
Diabetes Genomics Analysis Core (DGAC)
Stanford University School of Medicine -
John R. Pringle
Professor of Genetics
Current Research and Scholarly InterestsMuch of our research exploits the power of yeast as an experimentally tractable model eukaryote to investigate fundamental problems in cell and developmental biology such as the mechanisms of cell polarization and cytokinesis. In another project, we are developing the small sea anemone Aiptasia as a model system for study of the molecular and cellular biology of dinoflagellate-cnidarian symbiosis, which is critical for the survival of most corals but still very poorly understood.
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Jonathan Pritchard
Bing Professor of Population Studies, Professor of Genetics and Biology
Current Research and Scholarly InterestsWe are interested in a broad range of problems at the interface of genomics and evolutionary biology. One current focus of the lab is in understanding how genetic variation impacts gene regulation and complex traits. We also have long-term interests in using genetic data to learn about population structure, history and adaptation, especially in humans.
FOR UP-TO-DATE DETAILS ON MY LAB AND RESEARCH, PLEASE SEE: http://pritchardlab.stanford.edu -
Monika Priyadarshini
Postdoctoral Scholar, Genetics
BioI obtained my PhD from the Biological and Environmental Science Division at King Abdullah University for Science and Technology (KAUST, Saudi Arabia) in 2021. I had the opportunity to work with Christian Frøkjær-Jensen on a fascinating research project focusing on the epigenetic regulation of germline genes and the transgenerational inheritance of silencing in C. elegans.
My passion lies in the field of epigenetics, synthetic and molecular biology, and protein biochemistry. I am deeply intrigued by the intricacies of genome organization and am dedicated to unraveling the "rules" that govern it. Additionally, I'm committed to dissecting the molecular and structural changes that take place within chromatin. -
Xiaojie Qiu
Assistant Professor of Genetics
Current Research and Scholarly InterestsAt the Qiu Lab, our mission is to unravel and predict the intricacies of gene regulatory networks and cell-cell interactions pivotal in mammalian cell fate transitions over time and space, with a special emphasis on heart evolution, development, and disease. We are a dynamic and interdisciplinary team, harnessing the latest advancements in machine learning as well as single-cell and spatial genomics by integrating the predictive power of systems biology with the scalability of machine learning,
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Helge Raeder MD PhD
Visiting Professor, Genetics
BioHelge Ræder is a Full Professor at the Faculty of Medicine, University of Bergen (UiB), Norway and a Senior Consultant in Pediatric Endocrinology at Haukeland University Hospital, Bergen, Norway. With a background in cellular biology and diabetes research, he has significantly contributed to understanding diabetes through stem cell research. He has been a visiting scholar at Joslin Diabetes Center, Harvard Medical School with C. Ronald Kahn (2005-2006) and with Rohit N Kulkarni (2010-2011). As the Vice Dean of Innovation at UiB (2017-2024), he has spearheaded the establishment of ecosystems that catalyze breakthrough innovations, including a new Medical Innovation Centre. His research aims to unravel the biology of diabetes and endocrine disorders, focusing on the interplay between genetics, proteomics, and stem cell biology. Dr. Ræder's work has resulted in publications in high-impact journals including Nature, Nature Genetics, Nature Metabolism, Diabetes, Journal of Bone and Mineral Research and Nature Reviews Endocrinology. He has been recognized with several awards, including the Young Investigator’s Award from the International Society for Pediatric and Adolescent Diabetes. He has been an invited speaker at the IPITA-JDRF-HSCI Key opinion leader´s meeting on stem cell-derived beta cells at Harvard Medical School. Currently, he is a visiting professor at Stanford University, contributing to precision health research focusing on developing endocrine digital twins at Prof. Michael Snyder's Lab.
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Aoon Rizvi
Postdoctoral Scholar, Genetics
BioBS, Chemistry, University of Illinois at Urbana-Champaign (2018)
PhD. Chemistry, University of California, Irvine (2023) -
Morteza Roodgar DVM, PhD
Veterinarian Research Scientist, Genetics
BioDr. Morteza Roodgar is a veterinarian scientist with a research focus on Primate induced Pluripotent Stem Cells (iPSCs) and long-read genomics tools.
Dr. Roodgar's research focus is on primate stem cell biology, immunology, and comparative genomics of nonhuman primate models for human diseases. The long-term goal of Dr. Roodgar's research is to Replace, Reduce and Refine (aka 3 R’s) the use of animals in biomedical research leveraging primate induced pluripotent stem cells (iPSCs) and long-read genomic tools to speed up preclinical testing.
Previous research includes immunology and genomic susceptibility to infectious diseases (e.g., tuberculosis, TB) in nonhuman primate models, Preventive Veterinary Medicine and emerging zoonotic diseases (e.g., COVID-19 and Monkeypox). -
Julien Sage
Elaine and John Chambers Professor of Pediatric Cancer and Professor of Genetics
Current Research and Scholarly InterestsWe investigate the mechanisms by which normal cells become tumor cells, and we combine genetics, genomics, and proteomics approaches to investigate the differences between the proliferative response in response to injury and the hyperproliferative phenotype of cancer cells and to identify novel therapeutic targets in cancer cells.
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Serena Sanulli
Assistant Professor of Genetics
Current Research and Scholarly InterestsWe study the organizing principles of the genome and how these principles regulate cell identity and developmental switches. We combine Biochemistry and Biophysical methods such as NMR and Hydrogen-Deuterium Exchange-MS with Cell Biology, and Genetics to explore genome organization across length and time scales and understand how cells leverage the diverse biophysical properties of chromatin to regulate genome function.
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Gavin Sherlock
Professor of Genetics
Current Research and Scholarly InterestsEvolution and the adaptive landscape using yeast as a model; Defining yeast transcriptomes; chromosomal evolution in hybrid yeast species
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Jou-Ho Shih
Postdoctoral Scholar, Genetics
Bio2011 B.S., Life Science, National Tsing Hwa University, Taiwan
2019 Ph.D., Genome and Systems Biology Degree Program, National Taiwan University, Taiwan; Advisor: Dr. Yuh-Shan Jou
2019-2020 Postdoctoral Fellow, Biomedical Science, Academia Sinica, Taiwan; Advisor: Dr. Yuh-Shan Jou
2020-present Postdoctoral Fellow, Dept. Genetics, Stanford University, CA; Advisor: Dr. Michael Snyder -
Mahasish Shome
Postdoctoral Scholar, Genetics
BioDr. Mahasish Shome is interested in understanding the underlying mechanism of disease progression. He uses various omics profiling to identify biomarkers relevant to the disease. He studies antibodies, cytokines, proteins and metabolites profile to decipher the connection of disease with markers. This helps in early diagnosis, understanding disease state and drug/vaccine effectiveness.
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Arend Sidow
Professor of Pathology and of Genetics
On Leave from 04/01/2024 To 02/21/2025Current Research and Scholarly InterestsWe have a highly collaborative research program in the evolutionary genomics of cancer. We apply well-established principles of phylogenetics to cancer evolution on the basis of whole genome sequencing and functional genomics data of multiple tumor samples from the same patient. Introductions to our work and the concepts we apply are best found in the Newburger et al paper in Genome Research and the Sidow and Spies review in TIGS.
More information can be found here: http://www.sidowlab.org
