School of Medicine
Showing 1-100 of 148 Results
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Nima Aghaeepour
Associate Professor (Research) of Anesthesiology, Perioperative and Pain Medicine (Adult MSD), of Pediatrics (Neonatology) and, by courtesy, of Biomedical Data Science
BioThank you for your interest. Please use the links on the bottom right side of this page to learn more about our laboratory's work.
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Russ B. Altman
Kenneth Fong Professor and Professor of Bioengineering, of Genetics, of Medicine, of Biomedical Data Science, Senior Fellow at the Stanford Institute for HAI and Professor, by courtesy, of Computer Science
Current Research and Scholarly InterestsI refer you to my web page for detailed list of interests, projects and publications. In addition to pressing the link here, you can search "Russ Altman" on http://www.google.com/
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Euan A. Ashley
Associate Dean, School of Medicine, Roger and Joelle Burnell Professor of Genomics and Precision Health, Professor of Medicine (Cardiovascular Medicine), of Genetics, of Biomedical Data Science and, by courtesy, of Pathology
Current Research and Scholarly InterestsThe Ashley lab is focused on precision medicine. We develop methods for the interpretation of whole genome sequencing data to improve the diagnosis of genetic disease and to personalize the practice of medicine. At the wet bench, we take advantage of cell systems, transgenic models and microsurgical models of disease to prove causality in biological pathways and find targets for therapeutic development.
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Shaimaa Bakr
Masters Student in Biomedical Data Science, admitted Autumn 2020
BioShaimaa is a graduate of the Ph.D. program, the Department of Electrical Engineering at Stanford and currently a postdoctoral researcher at the Gevaert lab at the Stanford Center for Biomedical Informatics Research (BMIR). Shaimaa is interested in developing multi-modal deep learning models using biomedical data with focus on genomic, radiology and histopathology data and applying these models to solve problems in cancer and other diseases. Prior to Stanford, she received her B.Sc. (Summa Cum Laude) from the American University in Cairo, where she studied Electronics Engineering and Computer Science. She obtained her MS degree in Electrical Engineering from Rensselaer Polytechnic Institute, working in the Cognitive and Immersive Systems lab, and advised by Professor Richard Radke.
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Corinne Beck
Program Manager, Center for Cancer Systems Biology (CCSB), Biomedical Data Science
Current Role at StanfordProgram Manager
Stanford Center for Cancer Systems Biology (CCSB)
Plevritis Lab
Department of Biomedical Data Science (DBDS)
School of Medicine | Stanford University -
Daniel Bloch
Professor (Research) of Biomedical Data Science (BDS), Emeritus
BioI received my PhD. in Mathematical Statistics in 1967. I joined the research community at the Stanford University School of Medicine, Division of Immunology & Rheumatology, in 1984 as head statistician directing the biostatistics consulting and analytic support of the Arthritis Rheumatism Aging Medical Information System (ARAMIS) and Multipurpose Arthritis Center (MAC) grant-related research programs. In 1993 I was appointed Associate Professor with a joint appointment in the Departments of Medicine and of Health Research & Policy, and am currently Professor of Biostatistics at Stanford University, emeritus since 2007. My contributions to the statistics literature span numerous fields, including methods of sample size estimation, efficiency and bias of estimators, research methods for kappa statistics, non-parametric classification methods and methods of assessing multi-parameter endpoints. I have over 200 peer-reviewed publications. I have been directly involved with the development of numerous criteria rules for classification of diseases and with establishing guidelines for clinical trial research and in proposing responder criteria for osteoarthritis drugs. Since 1987, I have been a consultant on an ad hoc basis to pharmaceutical and biotechnical firms, including both start-up and established companies. I have extensive experience with devices, drugs and biologics and have participated in all aspects of applying statistics to implement investigational plans; e.g.: for protocol development, design of trials, database design. I’ve been a member of the FDA Statistical Advisors Panel, the statistical member on numerous data safety monitoring boards, and frequently represent companies at meetings with the FDA
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Michelle Whirl-Carrillo
Principal Investigator and Director, PharmGKB, Biomedical Data Science
Current Role at StanfordPrincipal Investigator and Director, PharmGKB
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Christina Curtis
RZ Cao Professor, Professor of Genetics and of Biomedical Data Science
Current Research and Scholarly InterestsThe Curtis laboratory for Cancer Computational and Systems Biology is focused on the development and application of innovative experimental, computational, and analytical approaches to improve the diagnosis, treatment, and early detection of cancer.
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Francisco M. De La Vega
Adjunct Professor, Biomedical Data Science
BioFrancisco De La Vega is a distinguished geneticist and computational biologist, and an experienced technical executive, widely recognized for his expertise in clinical and population genomics, and bioinformatics. Currently serving as the Vice President of Hereditary Disease at Tempus Labs, Francisco is spearheading the development of comprehensive germline genetic tests and conducting innovative research into racial disparities in cancer leveraging Tempus’ multimodal Real-World Data. His work focuses on uncovering the connections between genetic ancestry and cancer genome mutational profiles that may help explain the differences in cancer incidence and outcomes across races and ethnicities. In addition to his role at Tempus Labs, Francisco is an Adjunct Professor in the Department of Biomedical Data Science at Stanford University School of Medicine and is a member of the Board of Directors of the International Society of Computational Biology, serving from 2022 to 2025.
Francisco teaches BIODS-235: "Best practices for developing data science software for clinical and healthcare applications" every Winter quarter. -
Manisha Desai (She/Her/Hers)
Kim and Ping Li Professor, Professor (Research) of Medicine (Quantitative Sciences Unit), of Biomedical Data Science and, by courtesy, of Epidemiology and Population Health
Current Research and Scholarly InterestsDr. Desai is the Director of the Quantitative Sciences Unit. She is interested in the application of biostatistical methods to all areas of medicine including oncology, nephrology, and endocrinology. She works on methods for the analysis of epidemiologic studies, clinical trials, and studies with missing observations.
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Scott Fleming
Ph.D. Student in Biomedical Data Science, admitted Autumn 2018
BioScott Fleming is a Ph.D. Student in Stanford's Biomedical Informatics Training Program, Department of Biomedical Data Science. He completed his B.S. in Mathematical and Computational Science at Stanford University. During that time, he worked with Dr. Leanne Williams to build pipelines for analyzing heterogeneous, high-dimensional datasets in order to discover patterns of brain activity that contribute to anxiety and depression. His most recent work has focused on developing machine learning methods to make accurate and effective crowd-powered diagnoses for children with autism and other developmental disorders.
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Andrew Gentles
Assistant Professor (Research) of Pathology, of Medicine (BMIR) and, by courtesy, of Biomedical Data Science
Current Research and Scholarly InterestsComputational systems biology
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Olivier Gevaert
Associate Professor of Medicine (Biomedical Informatics) and of Biomedical Data Science
Current Research and Scholarly InterestsMy lab focuses on biomedical data fusion: the development of machine learning methods for biomedical decision support using multi-scale biomedical data. We primarily use methods based on regularized linear regression to accomplish this. We primarily focus on applications in oncology and neuroscience.
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Li Gong
Scientific Data Curator 3, Biomedical Data Science
Current Role at StanfordI am a senior scientific curator at PharmGKB, and also serves as the program manager for the Stanford ClinGen team and coordinator for the ClinGen Pharmacogenomics Working Group.
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Kari Hanson
Lecturer, Biomedical Data Science
BioKari is a former technology executive with a passion for entrepreneurship, innovation, business strategy and making the world a better place. Having worked as a coach, investor, advisor, board member and CFO, she enjoys empowering students and entrepreneurs to thrive in life, the classroom and the marketplace.
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Trevor Hastie
John A. Overdeck Professor, Professor of Statistics and of Biomedical Data Sciences
Current Research and Scholarly InterestsFlexible statistical modeling for prediction and representation of data arising in biology, medicine, science or industry. Statistical and machine learning tools have gained importance over the years. Part of Hastie's work has been to bridge the gap between traditional statistical methodology and the achievements made in machine learning.
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Tina Hernandez-Boussard
Professor of Medicine (Biomedical Informatics), of Biomedical Data Science, of Surgery and, by courtesy, of Epidemiology and Population Health
Current Research and Scholarly InterestsMy background and expertise is in the field of computational biology, with concentration in health services research. A key focus of my research is to apply novel methods and tools to large clinical datasets for hypothesis generation, comparative effectiveness research, and the evaluation of quality healthcare delivery. My research involves managing and manipulating big data, which range from administrative claims data to electronic health records, and applying novel biostatistical techniques to innovatively assess clinical and policy related research questions at the population level. This research enables us to create formal, statistically rigid, evaluations of healthcare data using unique combinations of large datasets.
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Zhi Huang
Postdoctoral Scholar, Biomedical Data Sciences
BioZhi Huang received his Bachelor of Science degree in Automation (BS--MS straight entrance class) from Xi'an Jiaotong University School of Electronic and Information Engineering in June 2015. In August 2021, He received a Ph.D. degree from Purdue University, majoring in Electrical and Computer Engineering (ECE).
His background is in the area of Machine and Deep Learning, Computational Pathology, Computational Biology, and Bioinformatics.
From May 2019 to August 2019, he was at Philips Research North America as a Research Intern. -
Alexander Ioannidis
Affiliate, Biomedical Data Science
Adjunct Professor, Institute for Computational and Mathematical Engineering (ICME)BioDr. Alexander Ioannidis is an Adjunct Professor in Computational and Mathematical Engineering, where he teaches machine learning and data science, and is a researcher in the Department of Biomedical Data Science at Stanford Medical School. He earned his Ph.D. from Stanford University in Computational and Mathematical Engineering together with an M.S. in Management Science and Engineering (Optimization). He graduated summa cum laude from Harvard University in Chemistry and Physics and earned an M.Phil at the University of Cambridge from the Department of Applied Math and Theoretical Physics in Computational Biology. His research focuses on the design of algorithms and application of computational methods for problems in genomics, clinical data science, and precision health with a particular focus on underrepresented populations in Oceania and Latin America.
*For John Ioannidis (no relation), see here, https://profiles.stanford.edu/john-ioannidis -
John P.A. Ioannidis
Professor of Medicine (Stanford Prevention Research), of Epidemiology and Population Health and by courtesy, of Statistics and of Biomedical Data Science
Current Research and Scholarly InterestsMeta-research
Evidence-based medicine
Clinical and molecular epidemiology
Human genome epidemiology
Research design
Reporting of research
Empirical evaluation of bias in research
Randomized trials
Statistical methods and modeling
Meta-analysis and large-scale evidence
Prognosis, predictive, personalized, precision medicine and health
Sociology of science -
Asef Islam
Masters Student in Biomedical Data Science, admitted Winter 2023
Masters Student in Computer Science, admitted Autumn 2022Current Research and Scholarly InterestsAI in medicine and other fields, particularly ML and CV techniques
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Iain Johnstone
Marjorie Mhoon Fair Professor of Quantitative Science and Professor of Statistics and of Biomedical Data Sciences
Current Research and Scholarly InterestsEmpirical bias/shrinkage estimation; non-parametric, smoothing; statistical inverse problems.
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Teri Klein
Professor (Research) of Biomedical Data Science, of Medicine (BMIR) and, by courtesy, of Genetics
Current Research and Scholarly InterestsCo-founder, Pacific Symposium on Biocomputing
NIEHS, Site Visit Reviewer
NIH, Study Section Reviewer -
Curtis Langlotz
Professor of Radiology (Thoracic Imaging), of Biomedical Informatics Research, of Biomedical Data Science and Senior Fellow at the Stanford Institute for HAI
Current Research and Scholarly InterestsI am interested in the use of deep neural networks and other machine learning technologies to help radiologists detect disease and eliminate diagnostic errors. My laboratory is developing deep neural networks that detect and classify disease on medical images. We also develop natural language processing methods that use the narrative radiology report to create large annotated image training sets for supervised machine learning experiments.
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Philip W. Lavori
Professor of Biomedical Data Science, Emeritus
Current Research and Scholarly InterestsBiostatistics, clinical trials, longitudinal studies, casual inference from observational studies, genetic tissue banking, informed consent. Trial designs for dynamic (adaptive) treatment regimes, psychiatric research, cancer.
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Laura C. Lazzeroni, Ph.D.
Professor (Research) of Psychiatry and Behavioral Sciences and, by courtesy, of Biomedical Data Science
Current Research and Scholarly InterestsStatistics/Data Science. I develop & apply models, methods & algorithms for complex data in medical science & biology. I am also interested in the interplay between fundamental statistical properties (e.g. variability, bias, p-values) & how scientists actually use & interpret data. My work in statistical genetics includes: the invention of Plaid bi-clustering for gene expression data; methods for twin, association, & family studies; multiple testing & estimation for high dimensional arrays.
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Sheng Liu
Postdoctoral Scholar, Biomedical Data Sciences
BioSheng Liu is a postdoctoral fellow at Stanford University. In May 2023, He received a Ph.D. degree from New York University, majoring in Data Science and Machine Learning. His background is in the area of robust and trustworthy machine learning, machine learning for healthcare.
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Ying Lu
Professor of Biomedical Data Science and, by courtesy, of Epidemiology
Current Research and Scholarly InterestsBiostatistics, clinical trials, statistical evaluation of medical diagnostic tests, radiology, osteoporosis, meta-analysis, medical decision making
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Cassie Ann Ludwig, MD, MS (she/her/hers)
Assistant Professor of Ophthalmology (Research/Clinical Trials)
Masters Student in Biomedical Data Science, admitted Autumn 2023Current Research and Scholarly InterestsMy research at present focuses on better understanding high and pathologic myopia and their retina sequelae (retinal detachments, myopic traction maculopathy, myopic macular degeneration) through informatics and data-driven research. My goal is to make discoveries within the field of Ophthalmology that will impact the rest of medicine, taking advantage of our ready access to the only visible portion of the central nervous system.
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Matthew Lungren
Adjunct Professor, Biomedical Data Science
BioDr. Lungren is Chief Data Science Officer for Microsoft Health & Life Sciences where he focuses on translating cutting edge technology, including generative AI and cloud services, into innovative healthcare applications. As a physician and clinical machine learning researcher, he maintains a part-time clinical practice at UCSF while also continuing his research and teaching roles as adjunct professor at Stanford University.
Prior to joining Microsoft, Dr Lungren was a clinical interventional radiologist and research faculty at Stanford University Medical School where he led the Stanford Center for Artificial Intelligence in Medicine and Imaging (AIMI). He later served as Principal for Clinical AI/ML at Amazon Web Services in World Wide Public Sector Healthcare, focusing on business development for clinical machine learning technologies in the public cloud.
His scientific work has led to more than 150 publications, including work on multi-modal data fusion models for healthcare applications, new computer vision and natural language processing approaches for healthcare specific domains, opportunistic screening with machine learning for public health applications, open medical data as public good, prospective clinical trials for clinical AI translation, and application of generative AI in healthcare. He has served as advisor for early stage startups and large fortune-500 companies on healthcare AI technology development and go-to-market strategy. Dr. Lungren's work has been featured in national news outlets such as NPR, Vice News, Scientific American, and he regularly speaks at national and international scientific meetings on the topic of AI in healthcare.
Dr. Lungren is also a top rated instructor on Coursera where his AI in Healthcare course designed especially for learners with non-technical backgrounds has been completed by more than 20k students around the world - enrollment is open now: https://www.coursera.org/learn/fundamental-machine-learning-healthcare -
Stephen B. Montgomery
Stanford Medicine Professor of Pathology, Professor of Genetics and of Biomedical Data Science
Current Research and Scholarly InterestsWe focus on understanding the effects of genome variation on cellular phenotypes and cellular modeling of disease through genomic approaches such as next generation RNA sequencing in combination with developing and utilizing state-of-the-art bioinformatics and statistical genetics approaches. See our website at http://montgomerylab.stanford.edu/
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Mark Musen
Stanford Medicine Professor of Biomedical Informatics Research, Professor of Medicine (Biomedical Informatics) and of Biomedical Data Science
Current Research and Scholarly InterestsModern science requires that experimental data—and descriptions of the methods used to generate and analyze the data—are available online. Our laboratory studies methods for creating comprehensive, machine-actionable descriptions both of data and of experiments that can be processed by other scientists and by computers. We are also working to "clean up" legacy data and metadata to improve adherence to standards and to facilitate open science broadly.
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Julia Palacios
Associate Professor of Statistics and of Biomedical Data Science
BioDr. Palacios seek to provide statistically rigorous answers to concrete, data driven questions in evolutionary genetics and public health . My research involves probabilistic modeling of evolutionary forces and the development of computationally tractable methods that are applicable to big data problems. Past and current research relies heavily on the theory of stochastic processes, Bayesian nonparametrics and recent developments in machine learning and statistical theory for big data.
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Sylvia K. Plevritis, PhD
William M. Hume Professor in the School of Medicine and Professor of Radiology (Integrative Biomedical Imaging Informatics at Stanford)
Current Research and Scholarly InterestsMy research program focuses on computational modeling of cancer biology and cancer outcomes. My laboratory develops stochastic models of the natural history of cancer based on clinical research data. We estimate population-level outcomes under differing screening and treatment interventions. We also analyze genomic and proteomic cancer data in order to identify molecular networks that are perturbed in cancer initiation and progression and relate these perturbations to patient outcomes.
