Stanford University
Showing 101-200 of 389 Results
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Rongxin Fang
Assistant Professor of Neurosurgery and, by courtesy, of Genetics
BioRongxin Fang received his Ph.D. in Bioinformatics and Systems Biology from the University of California, San Diego, under the mentorship of Bing Ren (2015–2019). During his doctoral training, he developed high-throughput genomic technologies and computational tools to map the structure and activity of the mammalian genome at large scale and single-cell resolution. He then applied these approaches to investigate how cis-regulatory elements - such as enhancers - control gene expression and drive the diverse transcriptional programs underlying cellular diversity in the mammalian brain. As an HHMI–Damon Runyon Postdoctoral Fellow at Harvard University (2019–2024). Rongxin developed and applied genome-scale, volumetric 3D transcriptome imaging methods to map the molecular and cellular architecture of the mammalian brain across evolution and aging. He also contributed to the collaboration with Adam Cohen and Catherine Dulac to integrate transcriptome imaging with functional neuronal imaging, identifying neuronal populations in the animal brain that underlie specific brain functions.
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Yanan Feng
Sr. Research Scientist - Basic Life, Genetics
Current Role at StanfordSenior Research Scientist, Department of Genetics, Dr. Stanley N. Cohen's lab
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Andrew Fire
George D. Smith Professor of Molecular and Genetic Medicine and Professor of Pathology and of Genetics
Current Research and Scholarly InterestsWhile chromosomal inheritance provides cells with one means for keeping and transmitting genetic information, numerous other mechanisms have (and remain to be) discovered. We study novel cellular mechanisms that enforce genetic constancy and permit genetic change. Underlying our studies are questions of the diversity of inheritance mechanisms, how cells distinguish such mechanisms as "wanted" versus "unwanted", and of the consequences and applications of such mechanisms in health and disease.
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James Ford
Professor of Medicine (Oncology) of Genetics and, by courtesy, of Pediatrics
Current Research and Scholarly InterestsMammalian DNA repair and DNA damage inducible responses; p53 tumor suppressor gene; transcription in nucleotide excision repair and mutagenesis; genetic determinants of cancer cell sensitivity to DNA damage; genetics of inherited cancer susceptibility syndromes and human GI malignancies; clinical cancer genetics of BRCA1 and BRCA2 breast cancer and mismatch repair deficient colon cancer.
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Polly Fordyce
Associate Professor of Bioengineering and of Genetics
Current Research and Scholarly InterestsThe Fordyce Lab is focused on developing new instrumentation and assays for making quantitative, systems-scale biophysical measurements of molecular interactions. Current research in the lab is focused on three main platforms: (1) arrays of valved reaction chambers for high-throughput protein expression and characterization, (2) spectrally encoded beads for multiplexed bioassays, and (3) sortable droplets and microwells for single-cell assays.
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Uta Francke
Professor of Genetics and of Pediatrics, Emerita
Current Research and Scholarly InterestsFunctional consequences and pathogenetic mechanisms of mutations and microdeletions in human neurogenetic syndromes and mouse models. Integration of genomic information into medical care.
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Judith Frydman
Donald Kennedy Chair in the School of Humanities and Sciences and Professor of Genetics
Current Research and Scholarly InterestsThe long term goal of our research is to understand how proteins fold in living cells. My lab uses a multidisciplinary approach to address fundamental questions about molecular chaperones, protein folding and degradation. In addition to basic mechanistic principles, we aim to define how impairment of cellular folding and quality control are linked to disease, including cancer and neurodegenerative diseases and examine whether reengineering chaperone networks can provide therapeutic strategies.
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Margaret T. Fuller
Reed-Hodgson Professor of Human Biology, Katharine Dexter McCormick and Stanley McCormick Memorial Professor and Professor of Genetics and of Obstetrics/Gynecology (Reproductive and Stem Cell Biology)
Current Research and Scholarly InterestsRegulation of self-renewal, proliferation and differentiation in adult stem cell lineages. Developmental tumor suppressor mechanisms and regulation of the switch from proliferation to differentiation. Cell type specific transcription machinery and regulation of cell differentiation. Developmental regulation of cell cycle progression during male meiosis.
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Aaron D. Gitler
Stanford Medicine Basic Science Professor
Current Research and Scholarly InterestsWe investigate the mechanisms of human neurodegenerative diseases, including Alzheimer disease, Parkinson disease, and ALS. We don't limit ourselves to one model system or experimental approach. We start with yeast, perform genetic and chemical screens, and then move to other model systems (e.g. mammalian tissue culture, mouse, fly) and even work with human patient samples (tissue sections, patient-derived cells, including iPS cells) and next generation sequencing approaches.
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Anna L Gloyn
Professor of Pediatrics (Endocrinology) and of Genetics
Current Research and Scholarly InterestsAnna's current research projects are focused on the translation of genetic association signals for type 2 diabetes and glycaemic traits into cellular and molecular mechanisms for beta-cell dysfunction and diabetes. Her group uses a variety of complementary approaches, including human genetics, functional genomics, physiology and islet-biology to dissect out the molecular mechanisms driving disease pathogenesis.
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Henry T. (Hank) Greely
Deane F. and Kate Edelman Johnson Professor of Law and, Professor, by courtesy, of Genetics
Current Research and Scholarly InterestsSince 1992 my work has concentrated on ethical, legal, and social issues in the biosciences. I am particularly active on issues arising from neuroscience, human genetics, and stem cell research, with cross-cutting interests in human research protections, human biological enhancement, and the future of human reproduction.
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William Greenleaf
Professor of Genetics
Current Research and Scholarly InterestsOur lab focuses on developing methods to probe both the structure and function of molecules encoded by the genome, as well as the physical compaction and folding of the genome itself. Our efforts are split between building new tools to leverage the power of high-throughput sequencing technologies and cutting-edge optical microscopies, and bringing these technologies to bear against basic biological questions by linking DNA sequence, structure, and function.
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Anthony Harris
Postdoctoral Scholar, Genetics
BioAnthony Harris is a postdoctoral fellow in the Department of Genetics at Stanford School of Medicine, where he investigates the organization and function of the genome during cellular development. His research focuses on uncovering fundamental principles of chromosome structure, cellular differentiation, and genome stability. By combining experimental molecular biology, computational modeling, and third generation sequencing technologies, Dr. Harris aims to elucidate the mechanisms that shape chromatin architecture and direct genome maintenance. His interdisciplinary approach integrates cutting-edge quantitative analysis with traditional molecular techniques to advance understanding of the relationship between cellular organization and disease.
Dr. Harris has developed computational tools for genomic data analysis and applies data-driven strategies to study chromatin structure and gene regulation. His work has been published in leading journals, including EMBO Journal, Genetics, and Developmental Cell, with projects spanning meiosis regulation, transcriptional control, and genome integrity. These experiences reflect his commitment to understanding how chromatin organization and gene expression guide cell fate and function.
Dr. Harris earned his Bachelor of Science in Biochemistry from the University of Minnesota and his Ph.D. in Molecular and Cellular Biology from the University of California, Berkeley. He brings expertise in data analysis, computational biology, scientific writing, and collaborative research. His broad training spans biochemistry, cell biology, microbiology, genetics, and computational genomics. -
Adam He
Postdoctoral Scholar, Genetics
BioI am a computational biologist/bioinformatician. My primary research interests lie in using machine learning models to decipher how gene regulation is encoded in our genomes. I’ve also worked on variant effect and complex disease risk prediction.
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Rogelio A. Hernández-López
Assistant Professor of Bioengineering and of Genetics
Current Research and Scholarly InterestsOur group works at the interface of mechanistic, synthetic, and systems biology to understand and program cellular recognition, communication, and organization. We are currently interested in engineering biomedical relevant cellular behaviors for cancer immunotherapy.
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Leonore A. Herzenberg
Department of Genetics Flow Cytometry Professor
Current Research and Scholarly InterestsB-cell lineage development and function; IgH rearrangement and repertoire analysis; HSC and lymphoid stem cells and lineages in mouse and man; T cell regulation of antibody responses; glutathione regulation of lymphoid and myeloid subst functions; development of advanced methods and software for Fluorescence-Activated Cell Sorting (FACS) and related analyses.
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Felix Horns
Assistant Professor of Genetics
BioFelix Horns is an Assistant Professor of Genetics at Stanford University and a Core Investigator at Arc Institute. The Horns group works at the interface of synthetic biology and genomics to develop and apply technologies for monitoring and manipulating cells, with particular focus on the immune system and the brain.
Felix earned his B.A. in Biology from Amherst College and his Ph.D. in Biophysics working with Dr. Stephen Quake at Stanford, where he developed and used single-cell genomics, high-throughput sequencing, and computational analysis approaches to understand the origins of human antibody diversity and to discover principles of how brain circuits assemble during development. He then joined Dr. Michael Elowitz's lab at the California Institute of Technology where he combined synthetic biology and genomics approaches to develop RNA packaging, secretion, and delivery systems, which open new avenues for understanding and controlling cellular behaviors. -
Alexander Ioannidis
Assistant Professor (Research) of Genetics and of Biomedical Data Science
Adjunct Professor, Institute for Computational and Mathematical Engineering (ICME)BioDr. Ioannidis earned his Ph.D. from Stanford University in Computational and Mathematical Engineering together with an M.S. in Management Science and Engineering (Optimization). He graduated summa cum laude from Harvard University in Chemistry and Physics and earned an M.Phil at the University of Cambridge from the Department of Applied Math and Theoretical Physics in Computational Biology. His research focuses on the design of algorithms and application of computational methods for problems in precision health, genomics, clinical data science, and AI in healthcare.
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Livnat Jerby
Assistant Professor of Genetics
Current Research and Scholarly InterestsCombining and advancing functional genomics, cell engineering, synthetic biology, AI, and basic immunology to uncover, decode, rewire, and develop mechanisms to selectively eliminate and reprogram disease-driving cells as a foundation for disease treatment and prevention.
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Feng Jiang
Postdoctoral Scholar, Genetics
BioI am a postdoctoral researcher working on RNA editing.
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Peter William Earl Kane
Affiliate, Genetics
BioHelping oncology and rare disease patients.
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Amarnath K R
Affiliate, Genetics
BioAmarnath K R is a computational scientist and deep learning engineer driving breakthroughs in biomedical AI specializing in the fusion of multi-omics data, deep learning, and clinical statistics to tackle some of medicine’s most complex challenges. His current work at Stanford University's Department of Genetics focuses on developing a deep learning framework for cross-modal cell type label transfer by aligning single-cell RNA-seq and proteomics data in a shared latent space. Using autoencoders and a joint contrasitive-based training, he achieves highly reliable annotation of unlabeled proteomics cells with RNA-derived ground truth. This work enables accurate integration of transcriptomic and proteomic modalities for downstream biological discovery and holds promise for expanding cell atlases.
What sets Amarnath apart is his commitment to both technical excellence and translational impact. From designing novel transformer architectures for histopathology and image inpainting, to developing AI-powered tools for emergency departments in India, his work is grounded in real-world deployment and global health relevance. His projects span continents and disciplines like, from integrating multi-omics datasets to uncover disease mechanisms and predict therapeutic response, to an acoustic classifier for biodiversity, to decoding brain function through neuroinformatics.
With multiple publications, international collaborations, and an unwavering drive to innovate, he represents a new generation of computational scientists shaping the future of personalized, data-driven medicine. -
Maya M. Kasowski
Assistant Professor of Pathology, of Medicine (Pulmonary, Allergy and Critical Care Medicine) and, by courtesy, of Genetics
BioI am a clinical pathologist and assistant professor in the Departments of Medicine, Pathology, and Genetics (by courtesy) at Stanford. I completed my MD-PhD training at Yale University and my residency training and a post-doctoral fellowship in the Department of Genetics at Stanford University. My experiences as a clinical pathologist and genome scientist have made me passionate about applying cutting-edge technologies to primary patient specimens in order to characterize disease pathologies at the molecular level. The core focus of my lab is to study the mechanisms by which genetic variants influence the risk of disease through effects on intermediate molecular phenotypes.
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Mark A. Kay, M.D., Ph.D.
Dennis Farrey Family Professor of Pediatrics, and Professor of Genetics
Current Research and Scholarly InterestsMark A. Kay, M.D., Ph.D. Director of the Program in Human Gene Therapy and Professor in the Departments of Pediatrics and Genetics. Respected worldwide for his work in gene therapy for hemophilia, Dr. Kay and his laboratory focus on establishing the scientific principles and developing the technologies needed for achieving persistent and therapeutic levels of gene expression in vivo. The major disease models are hemophilia, hepatitis C, and hepatitis B viral infections.
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Karla Kirkegaard
Violetta L. Horton Professor and Professor of Microbiology and Immunology
Current Research and Scholarly InterestsThe biochemistry of RNA-dependent RNA polymerase function, the cell biology of the membrane rearrangements induced by positive-strand RNA virus infection of human cells, and the genetics of RNA viruses, which, with their high error rates, live at the brink of error catastrophe, are investigated in the Kirkegaard laboratory.
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Teri Klein
Professor (Research) of Biomedical Data Science, of Medicine (Computational Medicine) and, by courtesy, of Genetics
Current Research and Scholarly InterestsCo-founder, Pacific Symposium on Biocomputing
NIEHS, Site Visit Reviewer
NIH, Study Section Reviewer -
Gabriele Kockelkoren
Postdoctoral Scholar, Genetics
BioGabriele has a strong background in both physics and molecular biology and, accordingly, he strives in interdisciplinary environments. After completing a cum laude BSc. and MSc. in Nanobiology at the Technical University of Delft in The Netherlands, Gabriele pursued a PhD at the University of Copenhagen under the supervision of Prof. Dimitrios Stamou. In his PhD, Gabriele studied the nanoscale spatial organization of G protein-coupled receptors (GPCRs) at the plasma membrane of living cells. Importantly, his work reveals heterogeneous spatial patterns of receptor density and activation, that are modulated in a drug-dependent manner. These findings identify GPCR spatial organization as an integral element of their activity and signaling. Currently, Gabriele is a Postdoctoral Fellow in the lab of Prof. Alice Ting developing programmable receptors for molecular sensing and controlling cellular behaviour.
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Naoki Konno
Postdoctoral Scholar, Genetics
BioNaoki has extensive training in evolutionary biology and bioinformatics, and he thrives in interdisciplinary environments bridging computation and developmental biology. After earning his BSc. and MSc. in Systems Biology and Bioinformatics at the University of Tokyo, Naoki pursued a PhD in Evolutionary Biology under the supervision by Prof. Chikara Furusawa. He has developed computational frameworks to reconstruct and predict evolutionary processes, including large-scale phylogenetic inference for both evolution and cell lineage tracing (FRACTAL) and predictive models of microbial genome evolution (Evodictor). His work revealed generalizable rules of genome evolution and was recognized with multiple awards, including the JSPS Ikushi Prize.
Currently, Naoki is a Postdoctoral Scholar in the lab of Prof. Xiaojie Qiu at Stanford University School of Medicine. In his postdoctoral research, he investigates the evolutionary constraints of vertebrate development with a focus on the heart as a model system. By integrating single-cell and spatial transcriptomics with predictive modeling and CRISPR-based perturbations, he seeks to uncover how evolutionary principles shape developmental trajectories and contribute to congenital heart defects. Ultimately, Naoki aims to establish a broad research program in evolution-aware medicine, connecting evolutionary theory with biomedical challenges. -
Anshul Kundaje
Associate Professor of Genetics and of Computer Science
Current Research and Scholarly InterestsWe develop statistical and machine learning frameworks to model gene regulation and decipher the genetic and molecular basis of disease
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Shin-Huei Kuo, M.D., M.S.
Affiliate, Genetics
Visiting Scholar, GeneticsBioDr. Kuo is a Visiting Scholar in the Department of Genetics at Stanford University School of Medicine and an attending physician in the Division of Infectious Diseases at Kaohsiung Medical University Chung-Ho Memorial Hospital in Taiwan. Her clinical and research interests include HIV care, comorbidities, and prognosis modeling. At Stanford, she collaborates with faculty in the Snyder Lab to explore precision medicine approaches to infectious diseases and inflammaging.
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Linda (Yu-Ling) Lan
Basic Life Res Scientist, Genetics
BioLinda Lan, DVM, PhD is a postdoctoral fellow in the Snyder Lab. Her research focuses on understanding long-term illness post-acute infections by using a combination of different types of data (multi-omics) and wearable technologies. Currently, Linda is working on three projects.
The first project involves studying the shared mechanisms of long COVID, ME/CFS, and PTLDS using smartwatches and micro-sampling. The second project involves examining the role of autoantibodies in long COVID patients and COVID vaccine side effects. The third project involves exploring the changes in the molecular and physiological responses of astronauts during short space flights using multi-omics and wearable devices.
Linda previously conducted her PhD research at the University of Chicago, where she studied memory B cell responses to a chimeric-based universal influenza virus vaccine candidate. In her leisure time, she enjoys running, hiking, and listening to audiobooks.
